Strain Fitness in Variovorax sp. SCN45 around GFF2594

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
60	+				-0.3
76	+				-0.3
250	-		GFF2594	0.24	+0.9
343	-		GFF2594	0.33	-1.1
603	+		GFF2594	0.58	-0.1
603	+		GFF2594	0.58	-1.2
603	+		GFF2594	0.58	-1.0
603	+		GFF2594	0.58	-1.7
604	-		GFF2594	0.58	+0.3
613	+		GFF2594	0.59	+0.1
613	+		GFF2594	0.59	-0.3
613	+		GFF2594	0.59	-0.8
613	+		GFF2594	0.59	-0.6
613	+		GFF2594	0.59	+0.8
613	+		GFF2594	0.59	-0.4
613	+		GFF2594	0.59	-0.3
613	+		GFF2594	0.59	-0.2
613	+		GFF2594	0.59	-0.9
613	+		GFF2594	0.59	-0.4
614	-		GFF2594	0.59	-1.2
614	-		GFF2594	0.59	-0.2
614	-		GFF2594	0.59	+1.6
614	-		GFF2594	0.59	-1.1
614	-		GFF2594	0.59	-0.0
614	-		GFF2594	0.59	-0.2
614	-		GFF2594	0.59	+0.4
614	-		GFF2594	0.59	+2.0
614	-		GFF2594	0.59	-0.8
614	-		GFF2594	0.59	+0.1
614	-		GFF2594	0.59	-1.5
614	-		GFF2594	0.59	+0.4
858	+		GFF2594	0.83	+0.5
858	+		GFF2594	0.83	-0.6
859	-		GFF2594	0.83	+1.2
1,048	+				+0.1
1,048	+				+0.7
1,048	+				-0.0
1,075	+				-0.4
1,075	+				+0.8
1,088	-				+0.2
1,088	-				+0.6
1,139	-				-0.2
1,139	-				-1.8
1,144	+				+1.0
1,145	-				-0.0
1,411	+		GFF2595	0.32	-0.7
1,411	+		GFF2595	0.32	-0.7
1,411	+		GFF2595	0.32	-0.3
1,411	+		GFF2595	0.32	-1.7
1,411	+		GFF2595	0.32	-0.6
1,411	+		GFF2595	0.32	-1.1
1,411	+		GFF2595	0.32	-1.3
1,412	-		GFF2595	0.32	+1.3
1,412	-		GFF2595	0.32	-1.1
1,412	-		GFF2595	0.32	-0.0
1,412	-		GFF2595	0.32	-0.8
1,588	+		GFF2595	0.55	-0.2
1,588	+		GFF2595	0.55	-0.8
1,805	-		GFF2595	0.83	-0.6