Strain Fitness in Variovorax sp. SCN45 around GFF2589

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2588 and GFF2589 are separated by 163 nucleotidesGFF2589 and GFF2590 are separated by 74 nucleotides GFF2588 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 643,592 to 645,688 GFF2588 GFF2589 - no description, at 645,852 to 646,010 GFF2589 GFF2590 - Isocitrate dehydrogenase [NAD] (EC 1.1.1.41), at 646,085 to 647,119 GFF2590 Position (kb) 645 646 647Strain fitness (log2 ratio) -2 -1 0 1 2 3at 645.733 kb on + strandat 645.733 kb on + strandat 645.733 kb on + strandat 645.733 kb on + strandat 645.733 kb on + strandat 645.733 kb on + strandat 645.734 kb on - strandat 645.822 kb on + strandat 645.822 kb on + strandat 645.823 kb on - strandat 645.823 kb on - strandat 645.823 kb on - strandat 645.823 kb on - strandat 645.861 kb on + strandat 645.862 kb on - strandat 645.942 kb on + strand, within GFF2589at 645.942 kb on + strand, within GFF2589at 645.943 kb on - strand, within GFF2589at 645.943 kb on - strand, within GFF2589at 645.943 kb on - strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.948 kb on + strand, within GFF2589at 645.949 kb on - strand, within GFF2589at 645.949 kb on - strand, within GFF2589at 645.949 kb on - strand, within GFF2589at 645.949 kb on - strand, within GFF2589at 645.949 kb on - strand, within GFF2589at 645.949 kb on - strand, within GFF2589at 645.949 kb on - strand, within GFF2589at 645.978 kb on + strand, within GFF2589at 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.046 kb on + strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.047 kb on - strandat 646.063 kb on + strandat 646.064 kb on - strandat 646.064 kb on - strandat 646.367 kb on + strand, within GFF2590at 646.367 kb on + strand, within GFF2590at 646.367 kb on + strand, within GFF2590at 646.367 kb on + strand, within GFF2590at 646.367 kb on + strand, within GFF2590at 646.367 kb on + strand, within GFF2590at 646.368 kb on - strand, within GFF2590at 646.368 kb on - strand, within GFF2590at 646.368 kb on - strand, within GFF2590at 646.368 kb on - strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.460 kb on + strand, within GFF2590at 646.461 kb on - strand, within GFF2590at 646.461 kb on - strand, within GFF2590at 646.461 kb on - strand, within GFF2590at 646.461 kb on - strand, within GFF2590at 646.461 kb on - strand, within GFF2590at 646.461 kb on - strand, within GFF2590at 646.461 kb on - strand, within GFF2590at 646.461 kb on - strand, within GFF2590at 646.461 kb on - strand, within GFF2590at 646.478 kb on + strand, within GFF2590at 646.478 kb on + strand, within GFF2590at 646.478 kb on + strand, within GFF2590at 646.478 kb on + strand, within GFF2590at 646.478 kb on + strand, within GFF2590at 646.478 kb on + strand, within GFF2590at 646.478 kb on + strand, within GFF2590at 646.478 kb on + strand, within GFF2590at 646.479 kb on - strand, within GFF2590at 646.479 kb on - strand, within GFF2590at 646.479 kb on - strand, within GFF2590at 646.479 kb on - strand, within GFF2590at 646.562 kb on + strand, within GFF2590at 646.562 kb on + strand, within GFF2590at 646.562 kb on + strand, within GFF2590at 646.562 kb on + strand, within GFF2590at 646.562 kb on + strand, within GFF2590at 646.563 kb on - strand, within GFF2590at 646.563 kb on - strand, within GFF2590at 646.673 kb on + strand, within GFF2590at 646.673 kb on + strand, within GFF2590at 646.673 kb on + strand, within GFF2590at 646.673 kb on + strand, within GFF2590at 646.674 kb on - strand, within GFF2590at 646.674 kb on - strand, within GFF2590at 646.674 kb on - strand, within GFF2590at 646.674 kb on - strand, within GFF2590at 646.685 kb on + strand, within GFF2590at 646.685 kb on + strand, within GFF2590at 646.685 kb on + strand, within GFF2590at 646.685 kb on + strand, within GFF2590at 646.685 kb on + strand, within GFF2590at 646.686 kb on - strand, within GFF2590at 646.686 kb on - strand, within GFF2590at 646.686 kb on - strand, within GFF2590at 646.686 kb on - strand, within GFF2590at 646.686 kb on - strand, within GFF2590at 646.686 kb on - strand, within GFF2590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
645,733 + +1.4
645,733 + -0.3
645,733 + +0.0
645,733 + +0.9
645,733 + -0.5
645,733 + -0.3
645,734 - -0.1
645,822 + -0.9
645,822 + +0.5
645,823 - -1.3
645,823 - +0.5
645,823 - +0.2
645,823 - +0.2
645,861 + -0.3
645,862 - +1.0
645,942 + GFF2589 0.57 +0.2
645,942 + GFF2589 0.57 -0.5
645,943 - GFF2589 0.57 -0.5
645,943 - GFF2589 0.57 +0.6
645,943 - GFF2589 0.57 -1.0
645,948 + GFF2589 0.60 -1.8
645,948 + GFF2589 0.60 +0.1
645,948 + GFF2589 0.60 +0.1
645,948 + GFF2589 0.60 -0.4
645,948 + GFF2589 0.60 -1.4
645,948 + GFF2589 0.60 +1.0
645,948 + GFF2589 0.60 +0.8
645,948 + GFF2589 0.60 -1.1
645,948 + GFF2589 0.60 -0.8
645,948 + GFF2589 0.60 +1.8
645,948 + GFF2589 0.60 -0.3
645,948 + GFF2589 0.60 -0.2
645,948 + GFF2589 0.60 +0.2
645,948 + GFF2589 0.60 -0.5
645,948 + GFF2589 0.60 -0.5
645,949 - GFF2589 0.61 -0.8
645,949 - GFF2589 0.61 -1.4
645,949 - GFF2589 0.61 +0.2
645,949 - GFF2589 0.61 +0.1
645,949 - GFF2589 0.61 -1.2
645,949 - GFF2589 0.61 +0.0
645,949 - GFF2589 0.61 -0.5
645,978 + GFF2589 0.79 -0.8
646,046 + -0.9
646,046 + -0.5
646,046 + -1.0
646,046 + +0.0
646,046 + -0.8
646,046 + -1.3
646,046 + -1.2
646,046 + -0.2
646,046 + -0.5
646,046 + -0.1
646,046 + -0.1
646,046 + -1.4
646,046 + +1.4
646,046 + -1.0
646,046 + +0.1
646,047 - -0.0
646,047 - +1.0
646,047 - -0.4
646,047 - +0.5
646,047 - +1.2
646,047 - -0.3
646,047 - +0.8
646,047 - +0.3
646,047 - -0.7
646,047 - -2.0
646,047 - +1.6
646,047 - -0.1
646,047 - +0.2
646,047 - +0.0
646,047 - -1.0
646,063 + -0.0
646,064 - -0.4
646,064 - +0.5
646,367 + GFF2590 0.27 +0.5
646,367 + GFF2590 0.27 -1.9
646,367 + GFF2590 0.27 +0.0
646,367 + GFF2590 0.27 +0.3
646,367 + GFF2590 0.27 +0.0
646,367 + GFF2590 0.27 -0.8
646,368 - GFF2590 0.27 -0.5
646,368 - GFF2590 0.27 -0.1
646,368 - GFF2590 0.27 -0.3
646,368 - GFF2590 0.27 +0.0
646,460 + GFF2590 0.36 +0.7
646,460 + GFF2590 0.36 -2.4
646,460 + GFF2590 0.36 -1.9
646,460 + GFF2590 0.36 -0.2
646,460 + GFF2590 0.36 +0.8
646,460 + GFF2590 0.36 +0.4
646,460 + GFF2590 0.36 -1.0
646,460 + GFF2590 0.36 -1.9
646,460 + GFF2590 0.36 +3.4
646,460 + GFF2590 0.36 +0.2
646,460 + GFF2590 0.36 +0.2
646,460 + GFF2590 0.36 -0.6
646,460 + GFF2590 0.36 +0.2
646,461 - GFF2590 0.36 -2.7
646,461 - GFF2590 0.36 -0.6
646,461 - GFF2590 0.36 -0.2
646,461 - GFF2590 0.36 -0.8
646,461 - GFF2590 0.36 -0.2
646,461 - GFF2590 0.36 -0.0
646,461 - GFF2590 0.36 +0.5
646,461 - GFF2590 0.36 -0.2
646,461 - GFF2590 0.36 -0.3
646,478 + GFF2590 0.38 -2.0
646,478 + GFF2590 0.38 -0.5
646,478 + GFF2590 0.38 -1.1
646,478 + GFF2590 0.38 -0.3
646,478 + GFF2590 0.38 +0.5
646,478 + GFF2590 0.38 +0.0
646,478 + GFF2590 0.38 -2.4
646,478 + GFF2590 0.38 +0.3
646,479 - GFF2590 0.38 +1.1
646,479 - GFF2590 0.38 +0.3
646,479 - GFF2590 0.38 -0.2
646,479 - GFF2590 0.38 -0.8
646,562 + GFF2590 0.46 -0.0
646,562 + GFF2590 0.46 -1.0
646,562 + GFF2590 0.46 -2.0
646,562 + GFF2590 0.46 +0.8
646,562 + GFF2590 0.46 -0.1
646,563 - GFF2590 0.46 +0.9
646,563 - GFF2590 0.46 -0.1
646,673 + GFF2590 0.57 +0.4
646,673 + GFF2590 0.57 -1.3
646,673 + GFF2590 0.57 -0.3
646,673 + GFF2590 0.57 +0.0
646,674 - GFF2590 0.57 -0.3
646,674 - GFF2590 0.57 +0.8
646,674 - GFF2590 0.57 -0.5
646,674 - GFF2590 0.57 +1.4
646,685 + GFF2590 0.58 -0.5
646,685 + GFF2590 0.58 -0.1
646,685 + GFF2590 0.58 +1.3
646,685 + GFF2590 0.58 -0.5
646,685 + GFF2590 0.58 +0.2
646,686 - GFF2590 0.58 -0.8
646,686 - GFF2590 0.58 -0.7
646,686 - GFF2590 0.58 +0.3
646,686 - GFF2590 0.58 -0.0
646,686 - GFF2590 0.58 -0.2
646,686 - GFF2590 0.58 -0.8

Or see this region's nucleotide sequence