Strain Fitness in Variovorax sp. SCN45 around GFF2253

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
308,936	-		GFF2252	0.58	-0.3
309,076	+		GFF2252	0.69	-1.7
309,076	+		GFF2252	0.69	-1.2
309,076	+		GFF2252	0.69	-1.2
309,076	+		GFF2252	0.69	-1.2
309,077	-		GFF2252	0.69	-0.8
309,265	-		GFF2252	0.84	-0.6
309,422	-				+1.8
309,422	-				-1.5
309,422	-				-0.4
309,578	+		GFF2253	0.41	+0.3
309,578	+		GFF2253	0.41	-0.2
309,579	-		GFF2253	0.41	-0.4
309,745	-				+1.1
309,745	-				-0.7
309,747	-				-0.3
309,747	-				-0.1
309,747	-				-1.8
309,747	-				-0.2
309,747	-				-1.1
309,747	-				+0.4
309,780	+				-1.2
309,781	-				-0.6
309,781	-				-0.2
309,788	+				-0.5
309,969	+		GFF2254	0.25	+0.3
309,970	-		GFF2254	0.25	+0.0
309,970	-		GFF2254	0.25	-0.5
309,982	-		GFF2254	0.27	-1.0
310,003	-		GFF2254	0.31	+0.1
310,003	-		GFF2254	0.31	+0.5
310,003	-		GFF2254	0.31	-1.4
310,077	+		GFF2254	0.42	-0.5
310,078	-		GFF2254	0.42	-0.8
310,078	-		GFF2254	0.42	+0.2
310,078	-		GFF2254	0.42	-1.2
310,078	-		GFF2254	0.42	-0.0
310,097	+		GFF2254	0.45	-0.0
310,098	-		GFF2254	0.45	-0.8
310,387	-				-1.2
310,664	+		GFF2255	0.22	-0.5