Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2210 and GFF2211 are separated by 39 nucleotides GFF2211 and GFF2212 are separated by 81 nucleotides GFF2212 and GFF2213 are separated by 15 nucleotides GFF2213 and GFF2214 are separated by 61 nucleotides
GFF2210 - Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly, at 272,169 to 273,560
GFF2210
GFF2211 - Flp pilus assembly protein RcpC/CpaB, at 273,600 to 274,595
GFF2211
GFF2212 - KEGG: prepilin peptidase CpaA , at 274,677 to 275,180
GFF2212
GFF2213 - Flp pilus assembly protein, pilin Flp, at 275,196 to 275,381
GFF2213
GFF2214 - Flp pilus assembly protein, pilin Flp, at 275,443 to 275,628
GFF2214
Position (kb) 273
274
275 Strain fitness (log2 ratio) -2
-1
0
1
2 at 272.644 kb on + strand, within GFF2210 at 272.644 kb on + strand, within GFF2210 at 272.644 kb on + strand, within GFF2210 at 272.645 kb on - strand, within GFF2210 at 272.751 kb on + strand, within GFF2210 at 272.772 kb on - strand, within GFF2210 at 272.772 kb on - strand, within GFF2210 at 272.799 kb on + strand, within GFF2210 at 272.800 kb on - strand, within GFF2210 at 272.898 kb on + strand, within GFF2210 at 272.898 kb on + strand, within GFF2210 at 272.986 kb on - strand, within GFF2210 at 272.986 kb on - strand, within GFF2210 at 272.986 kb on - strand, within GFF2210 at 272.986 kb on - strand, within GFF2210 at 273.109 kb on - strand, within GFF2210 at 273.178 kb on + strand, within GFF2210 at 273.178 kb on + strand, within GFF2210 at 273.178 kb on + strand, within GFF2210 at 273.179 kb on - strand, within GFF2210 at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.553 kb on + strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.554 kb on - strand at 273.555 kb on - strand at 273.604 kb on + strand at 273.604 kb on + strand at 273.604 kb on + strand at 273.604 kb on + strand at 273.604 kb on + strand at 273.604 kb on + strand at 273.605 kb on - strand at 273.605 kb on - strand at 273.605 kb on - strand at 273.605 kb on - strand at 273.605 kb on - strand at 273.605 kb on - strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.609 kb on - strand at 273.635 kb on + strand at 273.636 kb on - strand at 274.441 kb on + strand, within GFF2211 at 274.454 kb on - strand, within GFF2211 at 274.531 kb on + strand at 274.531 kb on + strand at 274.531 kb on + strand at 274.532 kb on - strand at 274.532 kb on - strand at 274.532 kb on - strand at 274.612 kb on + strand at 274.612 kb on + strand at 274.612 kb on + strand at 274.612 kb on + strand at 274.612 kb on + strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.678 kb on + strand at 274.678 kb on + strand at 274.678 kb on + strand at 274.678 kb on + strand at 274.678 kb on + strand at 274.679 kb on - strand at 274.679 kb on - strand at 274.679 kb on - strand at 274.679 kb on - strand at 274.726 kb on + strand at 274.726 kb on + strand at 274.727 kb on - strand at 274.727 kb on - strand at 274.727 kb on - strand at 274.727 kb on - strand at 274.727 kb on - strand at 274.897 kb on - strand, within GFF2212 at 274.981 kb on + strand, within GFF2212 at 274.981 kb on + strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 275.137 kb on + strand at 275.137 kb on + strand at 275.137 kb on + strand at 275.137 kb on + strand at 275.137 kb on + strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.151 kb on + strand at 275.151 kb on + strand at 275.151 kb on + strand at 275.151 kb on + strand at 275.152 kb on - strand at 275.152 kb on - strand at 275.152 kb on - strand at 275.152 kb on - strand at 275.214 kb on + strand at 275.214 kb on + strand at 275.214 kb on + strand at 275.215 kb on - strand, within GFF2213 at 275.215 kb on - strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.270 kb on + strand, within GFF2213 at 275.271 kb on - strand, within GFF2213 at 275.271 kb on - strand, within GFF2213 at 275.271 kb on - strand, within GFF2213 at 275.271 kb on - strand, within GFF2213 at 275.323 kb on + strand, within GFF2213 at 275.376 kb on - strand at 275.376 kb on - strand at 275.376 kb on - strand at 275.376 kb on - strand at 275.376 kb on - strand at 275.376 kb on - strand at 275.444 kb on + strand at 275.444 kb on + strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.475 kb on + strand, within GFF2214 at 275.476 kb on - strand, within GFF2214 at 275.476 kb on - strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.532 kb on + strand, within GFF2214 at 275.532 kb on + strand, within GFF2214 at 275.532 kb on + strand, within GFF2214 at 275.532 kb on + strand, within GFF2214 at 275.533 kb on - strand, within GFF2214 at 275.562 kb on + strand, within GFF2214 at 275.563 kb on - strand, within GFF2214 at 275.570 kb on + strand, within GFF2214
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 272,644 + GFF2210 0.34 -0.9 272,644 + GFF2210 0.34 -1.2 272,644 + GFF2210 0.34 +0.2 272,645 - GFF2210 0.34 -0.6 272,751 + GFF2210 0.42 -0.5 272,772 - GFF2210 0.43 -0.4 272,772 - GFF2210 0.43 -0.1 272,799 + GFF2210 0.45 +0.6 272,800 - GFF2210 0.45 -0.2 272,898 + GFF2210 0.52 +0.3 272,898 + GFF2210 0.52 +0.3 272,986 - GFF2210 0.59 -0.2 272,986 - GFF2210 0.59 +0.1 272,986 - GFF2210 0.59 -2.3 272,986 - GFF2210 0.59 -1.2 273,109 - GFF2210 0.68 +0.5 273,178 + GFF2210 0.72 -0.3 273,178 + GFF2210 0.72 +0.1 273,178 + GFF2210 0.72 -0.9 273,179 - GFF2210 0.73 -0.4 273,553 + +0.0 273,553 + +0.6 273,553 + +1.2 273,553 + -1.0 273,553 + -0.3 273,553 + -2.3 273,553 + -0.9 273,553 + -0.2 273,553 + -2.1 273,553 + -0.1 273,553 + +0.1 273,553 + -0.4 273,553 + -0.3 273,553 + +0.9 273,553 + -0.0 273,553 + -0.3 273,553 + +0.7 273,553 + -1.2 273,553 + -1.2 273,554 - +0.6 273,554 - -0.1 273,554 - +0.2 273,554 - -1.2 273,554 - +2.5 273,554 - -0.4 273,554 - -0.5 273,554 - -0.6 273,554 - -0.6 273,554 - -0.4 273,554 - -0.4 273,554 - +0.1 273,554 - +0.7 273,554 - -0.6 273,554 - -0.4 273,554 - -0.1 273,554 - +0.1 273,554 - -0.2 273,555 - -0.5 273,604 + +1.1 273,604 + +0.1 273,604 + -0.4 273,604 + -2.6 273,604 + -0.4 273,604 + +0.9 273,605 - -0.8 273,605 - -0.1 273,605 - -0.7 273,605 - -0.2 273,605 - -0.1 273,605 - -0.5 273,608 + +0.1 273,608 + +0.3 273,609 - +1.1 273,635 + -0.8 273,636 - -0.0 274,441 + GFF2211 0.84 +0.4 274,454 - GFF2211 0.86 -0.3 274,531 + -0.3 274,531 + +0.7 274,531 + +1.1 274,532 - -0.2 274,532 - -0.6 274,532 - -0.2 274,612 + -0.9 274,612 + -2.3 274,612 + -0.5 274,612 + -0.2 274,612 + -0.6 274,613 - +0.2 274,613 - -0.0 274,613 - -0.3 274,613 - -2.2 274,613 - -1.0 274,613 - -0.2 274,613 - +0.5 274,613 - +0.8 274,613 - +0.3 274,613 - -0.8 274,613 - +1.3 274,678 + -0.7 274,678 + -0.2 274,678 + +0.6 274,678 + -0.4 274,678 + -0.7 274,679 - +0.3 274,679 - -0.6 274,679 - +0.1 274,679 - -0.1 274,726 + -0.6 274,726 + -0.5 274,727 - +0.4 274,727 - -0.1 274,727 - +0.6 274,727 - +1.1 274,727 - -1.0 274,897 - GFF2212 0.44 +0.7 274,981 + GFF2212 0.60 +0.8 274,981 + GFF2212 0.60 -0.4 274,982 - GFF2212 0.61 +0.1 274,982 - GFF2212 0.61 +1.8 274,982 - GFF2212 0.61 -0.1 274,982 - GFF2212 0.61 -0.5 274,982 - GFF2212 0.61 -1.8 274,982 - GFF2212 0.61 -1.2 274,982 - GFF2212 0.61 +0.7 274,982 - GFF2212 0.61 +0.5 274,982 - GFF2212 0.61 -0.8 275,137 + -0.2 275,137 + +1.0 275,137 + -1.2 275,137 + +0.3 275,137 + -1.1 275,138 - -1.1 275,138 - -0.4 275,138 - +1.1 275,138 - +0.2 275,138 - -1.2 275,138 - +0.3 275,138 - -0.0 275,138 - -0.8 275,151 + +1.8 275,151 + -0.1 275,151 + +0.0 275,151 + +0.2 275,152 - -1.8 275,152 - -0.3 275,152 - -0.0 275,152 - +0.6 275,214 + +0.2 275,214 + -0.1 275,214 + -0.3 275,215 - GFF2213 0.10 -0.4 275,215 - GFF2213 0.10 -0.2 275,230 + GFF2213 0.18 -0.4 275,230 + GFF2213 0.18 -0.8 275,230 + GFF2213 0.18 +0.3 275,230 + GFF2213 0.18 -0.1 275,230 + GFF2213 0.18 +1.8 275,230 + GFF2213 0.18 -0.1 275,230 + GFF2213 0.18 -0.2 275,230 + GFF2213 0.18 -0.1 275,231 - GFF2213 0.19 -0.2 275,231 - GFF2213 0.19 +1.4 275,231 - GFF2213 0.19 -0.3 275,231 - GFF2213 0.19 -0.2 275,231 - GFF2213 0.19 +1.2 275,231 - GFF2213 0.19 -1.9 275,231 - GFF2213 0.19 -0.4 275,231 - GFF2213 0.19 -0.2 275,231 - GFF2213 0.19 -1.4 275,231 - GFF2213 0.19 -0.3 275,231 - GFF2213 0.19 -1.7 275,231 - GFF2213 0.19 +0.8 275,231 - GFF2213 0.19 +1.8 275,231 - GFF2213 0.19 -0.3 275,231 - GFF2213 0.19 +2.1 275,231 - GFF2213 0.19 -0.6 275,270 + GFF2213 0.40 -0.8 275,271 - GFF2213 0.40 -0.4 275,271 - GFF2213 0.40 +0.2 275,271 - GFF2213 0.40 -0.4 275,271 - GFF2213 0.40 -0.1 275,323 + GFF2213 0.68 +0.7 275,376 - -0.3 275,376 - +0.7 275,376 - -0.8 275,376 - -0.4 275,376 - +0.2 275,376 - +0.3 275,444 + +0.1 275,444 + -1.2 275,445 - +1.6 275,445 - +0.2 275,445 - -1.3 275,445 - -0.3 275,445 - -0.5 275,445 - -0.4 275,475 + GFF2214 0.17 +0.0 275,476 - GFF2214 0.18 -0.5 275,476 - GFF2214 0.18 -0.5 275,477 + GFF2214 0.18 -1.1 275,477 + GFF2214 0.18 -0.2 275,477 + GFF2214 0.18 -0.2 275,477 + GFF2214 0.18 -0.5 275,477 + GFF2214 0.18 -1.8 275,477 + GFF2214 0.18 -0.4 275,477 + GFF2214 0.18 -2.7 275,477 + GFF2214 0.18 -0.3 275,478 - GFF2214 0.19 -0.9 275,478 - GFF2214 0.19 +0.5 275,478 - GFF2214 0.19 -1.0 275,478 - GFF2214 0.19 +0.2 275,478 - GFF2214 0.19 +0.8 275,478 - GFF2214 0.19 +1.4 275,478 - GFF2214 0.19 -0.1 275,478 - GFF2214 0.19 -0.1 275,478 - GFF2214 0.19 +0.2 275,478 - GFF2214 0.19 +0.2 275,478 - GFF2214 0.19 -0.7 275,532 + GFF2214 0.48 +0.5 275,532 + GFF2214 0.48 -0.5 275,532 + GFF2214 0.48 -1.0 275,532 + GFF2214 0.48 +0.2 275,533 - GFF2214 0.48 +0.4 275,562 + GFF2214 0.64 -1.2 275,563 - GFF2214 0.65 -0.0 275,570 + GFF2214 0.68 +1.4
Or see this region's nucleotide sequence