Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2164 and GFF2165 are separated by 140 nucleotides GFF2165 and GFF2166 are separated by 63 nucleotides GFF2166 and GFF2167 are separated by 55 nucleotides
GFF2164 - Transcriptional regulator, IclR family, at 217,042 to 217,884
GFF2164
GFF2165 - Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, at 218,025 to 219,785
GFF2165
GFF2166 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 219,849 to 220,625
GFF2166
GFF2167 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 220,681 to 221,880
GFF2167
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 217.033 kb on + strand at 217.034 kb on - strand at 217.275 kb on - strand, within GFF2164 at 217.394 kb on + strand, within GFF2164 at 217.394 kb on + strand, within GFF2164 at 217.394 kb on + strand, within GFF2164 at 217.395 kb on - strand, within GFF2164 at 217.395 kb on - strand, within GFF2164 at 217.424 kb on + strand, within GFF2164 at 217.424 kb on + strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.646 kb on + strand, within GFF2164 at 217.700 kb on + strand, within GFF2164 at 217.700 kb on + strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.975 kb on + strand at 217.976 kb on - strand at 217.976 kb on - strand at 217.976 kb on - strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.992 kb on + strand at 217.993 kb on - strand at 217.993 kb on - strand at 217.993 kb on - strand at 217.993 kb on - strand at 217.999 kb on + strand at 217.999 kb on + strand at 218.000 kb on - strand at 218.000 kb on - strand at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.250 kb on + strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.251 kb on - strand, within GFF2165 at 218.385 kb on + strand, within GFF2165 at 218.385 kb on + strand, within GFF2165 at 218.385 kb on + strand, within GFF2165 at 218.385 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.583 kb on + strand, within GFF2165 at 218.584 kb on - strand, within GFF2165 at 218.584 kb on - strand, within GFF2165 at 218.584 kb on - strand, within GFF2165 at 218.584 kb on - strand, within GFF2165 at 218.749 kb on - strand, within GFF2165 at 218.794 kb on + strand, within GFF2165 at 218.794 kb on + strand, within GFF2165 at 218.794 kb on + strand, within GFF2165 at 218.794 kb on + strand, within GFF2165 at 218.795 kb on - strand, within GFF2165 at 218.845 kb on - strand, within GFF2165 at 218.901 kb on + strand, within GFF2165 at 218.901 kb on + strand, within GFF2165 at 218.902 kb on - strand, within GFF2165 at 218.902 kb on - strand, within GFF2165 at 218.902 kb on - strand, within GFF2165 at 219.129 kb on + strand, within GFF2165 at 219.129 kb on + strand, within GFF2165 at 219.130 kb on - strand, within GFF2165 at 219.130 kb on - strand, within GFF2165 at 219.130 kb on - strand, within GFF2165 at 219.130 kb on - strand, within GFF2165 at 219.222 kb on + strand, within GFF2165 at 219.222 kb on + strand, within GFF2165 at 219.223 kb on - strand, within GFF2165 at 219.223 kb on - strand, within GFF2165 at 219.223 kb on - strand, within GFF2165 at 219.223 kb on - strand, within GFF2165 at 219.282 kb on + strand, within GFF2165 at 219.364 kb on - strand, within GFF2165 at 219.423 kb on + strand, within GFF2165 at 219.423 kb on + strand, within GFF2165 at 219.423 kb on + strand, within GFF2165 at 219.424 kb on - strand, within GFF2165 at 219.424 kb on - strand, within GFF2165 at 219.492 kb on + strand, within GFF2165 at 219.492 kb on + strand, within GFF2165 at 219.493 kb on - strand, within GFF2165 at 219.493 kb on - strand, within GFF2165 at 219.495 kb on + strand, within GFF2165 at 219.495 kb on + strand, within GFF2165 at 219.495 kb on + strand, within GFF2165 at 219.495 kb on + strand, within GFF2165 at 219.495 kb on + strand, within GFF2165 at 219.495 kb on + strand, within GFF2165 at 219.495 kb on + strand, within GFF2165 at 219.496 kb on - strand, within GFF2165 at 219.496 kb on - strand, within GFF2165 at 219.496 kb on - strand, within GFF2165 at 219.496 kb on - strand, within GFF2165 at 219.600 kb on + strand, within GFF2165 at 219.600 kb on + strand, within GFF2165 at 219.600 kb on + strand, within GFF2165 at 219.601 kb on - strand, within GFF2165 at 219.601 kb on - strand, within GFF2165 at 219.601 kb on - strand, within GFF2165 at 219.642 kb on + strand at 219.642 kb on + strand at 219.643 kb on - strand at 219.643 kb on - strand at 219.688 kb on - strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.830 kb on + strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 219.831 kb on - strand at 220.335 kb on + strand, within GFF2166 at 220.575 kb on + strand at 220.575 kb on + strand at 220.576 kb on - strand at 220.576 kb on - strand at 220.576 kb on - strand at 220.700 kb on - strand at 220.700 kb on - strand at 220.700 kb on - strand at 220.700 kb on - strand at 220.774 kb on + strand at 220.774 kb on + strand at 220.774 kb on + strand at 220.775 kb on - strand at 220.775 kb on - strand at 220.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 217,033 + -0.7 217,034 - -1.1 217,275 - GFF2164 0.28 -0.2 217,394 + GFF2164 0.42 -1.2 217,394 + GFF2164 0.42 -2.1 217,394 + GFF2164 0.42 -1.2 217,395 - GFF2164 0.42 -0.6 217,395 - GFF2164 0.42 -3.3 217,424 + GFF2164 0.45 +1.3 217,424 + GFF2164 0.45 -0.2 217,425 - GFF2164 0.45 -1.8 217,425 - GFF2164 0.45 -1.6 217,425 - GFF2164 0.45 +0.4 217,425 - GFF2164 0.45 -1.5 217,425 - GFF2164 0.45 -1.4 217,425 - GFF2164 0.45 -0.5 217,646 + GFF2164 0.72 -1.2 217,700 + GFF2164 0.78 -0.8 217,700 + GFF2164 0.78 -1.4 217,701 - GFF2164 0.78 -1.2 217,701 - GFF2164 0.78 -0.8 217,701 - GFF2164 0.78 -0.5 217,701 - GFF2164 0.78 -2.5 217,876 + -0.4 217,876 + -0.2 217,876 + +0.9 217,876 + -0.1 217,876 + -1.2 217,876 + -1.1 217,876 + -0.6 217,876 + -1.2 217,876 + -1.3 217,876 + -0.6 217,876 + -0.5 217,876 + -0.4 217,876 + -0.9 217,876 + +0.1 217,877 - -2.0 217,877 - +0.1 217,877 - +0.2 217,877 - -0.6 217,877 - -0.7 217,877 - -0.0 217,877 - -0.1 217,877 - -0.5 217,877 - +0.4 217,877 - +0.1 217,877 - -0.8 217,877 - -1.8 217,877 - +0.9 217,877 - -0.5 217,877 - -2.3 217,878 + +0.5 217,878 + -0.2 217,878 + -0.2 217,878 + -0.2 217,878 + -2.5 217,878 + -1.3 217,878 + -0.4 217,878 + +0.6 217,879 - +0.2 217,879 - -0.3 217,879 - -1.8 217,879 - +0.1 217,879 - +0.3 217,879 - -0.1 217,879 - -0.3 217,879 - +0.4 217,879 - -0.5 217,975 + +1.0 217,976 - +0.5 217,976 - +0.1 217,976 - +0.4 217,992 + -0.3 217,992 + -0.5 217,992 + +0.8 217,992 + -0.8 217,992 + +1.5 217,992 + -1.1 217,992 + +1.0 217,993 - -0.2 217,993 - -0.2 217,993 - -0.5 217,993 - +0.8 217,999 + -0.2 217,999 + +0.2 218,000 - -0.6 218,000 - +0.6 218,250 + GFF2165 0.13 +1.6 218,250 + GFF2165 0.13 +0.0 218,250 + GFF2165 0.13 -0.9 218,250 + GFF2165 0.13 -0.1 218,250 + GFF2165 0.13 -0.2 218,250 + GFF2165 0.13 -0.5 218,251 - GFF2165 0.13 +0.3 218,251 - GFF2165 0.13 -1.0 218,251 - GFF2165 0.13 +0.3 218,251 - GFF2165 0.13 -0.0 218,251 - GFF2165 0.13 -0.5 218,251 - GFF2165 0.13 +0.5 218,251 - GFF2165 0.13 +0.8 218,385 + GFF2165 0.20 +1.8 218,385 + GFF2165 0.20 -1.7 218,385 + GFF2165 0.20 +0.6 218,385 + GFF2165 0.20 -0.5 218,583 + GFF2165 0.32 -0.6 218,583 + GFF2165 0.32 +0.2 218,583 + GFF2165 0.32 +0.4 218,583 + GFF2165 0.32 +1.0 218,583 + GFF2165 0.32 +0.3 218,584 - GFF2165 0.32 +0.4 218,584 - GFF2165 0.32 +0.3 218,584 - GFF2165 0.32 -0.6 218,584 - GFF2165 0.32 -1.1 218,749 - GFF2165 0.41 -1.0 218,794 + GFF2165 0.44 -0.4 218,794 + GFF2165 0.44 +0.2 218,794 + GFF2165 0.44 -0.2 218,794 + GFF2165 0.44 +1.8 218,795 - GFF2165 0.44 -0.2 218,845 - GFF2165 0.47 +0.6 218,901 + GFF2165 0.50 +0.6 218,901 + GFF2165 0.50 -0.3 218,902 - GFF2165 0.50 -0.4 218,902 - GFF2165 0.50 -1.1 218,902 - GFF2165 0.50 -0.5 219,129 + GFF2165 0.63 -0.3 219,129 + GFF2165 0.63 -0.1 219,130 - GFF2165 0.63 -0.1 219,130 - GFF2165 0.63 -0.1 219,130 - GFF2165 0.63 +0.3 219,130 - GFF2165 0.63 +0.5 219,222 + GFF2165 0.68 -0.4 219,222 + GFF2165 0.68 +0.1 219,223 - GFF2165 0.68 +0.9 219,223 - GFF2165 0.68 +1.3 219,223 - GFF2165 0.68 -2.2 219,223 - GFF2165 0.68 -0.5 219,282 + GFF2165 0.71 +1.8 219,364 - GFF2165 0.76 -0.3 219,423 + GFF2165 0.79 -0.4 219,423 + GFF2165 0.79 -0.2 219,423 + GFF2165 0.79 -0.1 219,424 - GFF2165 0.79 -1.4 219,424 - GFF2165 0.79 -0.5 219,492 + GFF2165 0.83 -0.5 219,492 + GFF2165 0.83 -1.9 219,493 - GFF2165 0.83 +0.2 219,493 - GFF2165 0.83 -0.8 219,495 + GFF2165 0.83 -0.5 219,495 + GFF2165 0.83 -0.5 219,495 + GFF2165 0.83 +0.1 219,495 + GFF2165 0.83 -0.7 219,495 + GFF2165 0.83 +0.2 219,495 + GFF2165 0.83 -0.4 219,495 + GFF2165 0.83 +0.3 219,496 - GFF2165 0.84 +0.2 219,496 - GFF2165 0.84 +0.7 219,496 - GFF2165 0.84 +1.1 219,496 - GFF2165 0.84 -0.1 219,600 + GFF2165 0.89 +0.1 219,600 + GFF2165 0.89 +0.8 219,600 + GFF2165 0.89 -0.4 219,601 - GFF2165 0.89 +0.1 219,601 - GFF2165 0.89 +0.6 219,601 - GFF2165 0.89 -1.0 219,642 + +0.6 219,642 + -0.3 219,643 - -0.7 219,643 - -0.6 219,688 - +0.8 219,830 + -0.4 219,830 + +1.8 219,830 + -1.2 219,830 + +0.8 219,830 + -1.2 219,830 + +0.1 219,830 + +1.5 219,830 + +0.5 219,830 + -0.2 219,830 + -0.2 219,830 + -0.7 219,830 + -0.4 219,830 + -0.4 219,831 - -0.1 219,831 - -1.1 219,831 - +0.8 219,831 - -0.5 219,831 - -1.2 219,831 - -0.7 219,831 - -0.4 219,831 - +0.1 219,831 - -1.1 219,831 - +0.2 219,831 - -1.2 219,831 - -0.2 219,831 - +1.5 220,335 + GFF2166 0.63 -1.3 220,575 + +0.1 220,575 + -0.4 220,576 - -1.0 220,576 - +0.4 220,576 - -0.1 220,700 - -0.7 220,700 - +0.6 220,700 - -2.1 220,700 - -1.3 220,774 + -0.2 220,774 + -0.2 220,774 + -0.1 220,775 - +0.5 220,775 - +1.0 220,775 - +0.2
Or see this region's nucleotide sequence