Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1944 and GFF1945 are separated by 24 nucleotides GFF1945 and GFF1946 are separated by 163 nucleotides
GFF1944 - hypothetical protein, at 638,693 to 639,622
GFF1944
GFF1945 - FIG01003589: hypothetical protein, at 639,647 to 640,846
GFF1945
GFF1946 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 641,010 to 642,365
GFF1946
Position (kb) 639
640
641 Strain fitness (log2 ratio) -2
-1
0
1
2 at 638.711 kb on + strand at 638.712 kb on - strand at 638.715 kb on + strand at 639.119 kb on + strand, within GFF1944 at 639.119 kb on + strand, within GFF1944 at 639.119 kb on + strand, within GFF1944 at 639.119 kb on + strand, within GFF1944 at 639.120 kb on - strand, within GFF1944 at 639.180 kb on - strand, within GFF1944 at 639.524 kb on + strand, within GFF1944 at 639.524 kb on + strand, within GFF1944 at 639.525 kb on - strand, within GFF1944 at 639.525 kb on - strand, within GFF1944 at 639.525 kb on - strand, within GFF1944 at 639.539 kb on + strand at 639.548 kb on + strand at 639.548 kb on + strand at 639.554 kb on + strand at 639.554 kb on + strand at 639.554 kb on + strand at 639.554 kb on + strand at 639.554 kb on + strand at 639.555 kb on - strand at 639.576 kb on + strand at 639.576 kb on + strand at 639.577 kb on - strand at 639.898 kb on - strand, within GFF1945 at 639.898 kb on - strand, within GFF1945 at 639.933 kb on + strand, within GFF1945 at 639.933 kb on + strand, within GFF1945 at 639.933 kb on + strand, within GFF1945 at 639.933 kb on + strand, within GFF1945 at 639.934 kb on - strand, within GFF1945 at 639.934 kb on - strand, within GFF1945 at 640.134 kb on + strand, within GFF1945 at 640.308 kb on + strand, within GFF1945 at 640.309 kb on - strand, within GFF1945 at 640.309 kb on - strand, within GFF1945 at 640.309 kb on - strand, within GFF1945 at 640.317 kb on + strand, within GFF1945 at 640.318 kb on - strand, within GFF1945 at 640.318 kb on - strand, within GFF1945 at 640.318 kb on - strand, within GFF1945 at 640.555 kb on - strand, within GFF1945 at 640.555 kb on - strand, within GFF1945 at 640.696 kb on - strand, within GFF1945 at 640.869 kb on - strand at 641.163 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.313 kb on + strand, within GFF1946 at 641.316 kb on + strand, within GFF1946 at 641.317 kb on - strand, within GFF1946 at 641.317 kb on - strand, within GFF1946 at 641.317 kb on - strand, within GFF1946 at 641.416 kb on - strand, within GFF1946 at 641.416 kb on - strand, within GFF1946 at 641.416 kb on - strand, within GFF1946 at 641.416 kb on - strand, within GFF1946 at 641.457 kb on + strand, within GFF1946 at 641.634 kb on + strand, within GFF1946 at 641.635 kb on - strand, within GFF1946 at 641.635 kb on - strand, within GFF1946 at 641.635 kb on - strand, within GFF1946 at 641.727 kb on + strand, within GFF1946
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 638,711 + -0.7 638,712 - +0.3 638,715 + -0.4 639,119 + GFF1944 0.46 +0.3 639,119 + GFF1944 0.46 +0.5 639,119 + GFF1944 0.46 -0.1 639,119 + GFF1944 0.46 -0.7 639,120 - GFF1944 0.46 -0.9 639,180 - GFF1944 0.52 -0.3 639,524 + GFF1944 0.89 -1.9 639,524 + GFF1944 0.89 -0.3 639,525 - GFF1944 0.89 -0.5 639,525 - GFF1944 0.89 -0.3 639,525 - GFF1944 0.89 +0.5 639,539 + +0.5 639,548 + -0.9 639,548 + -0.2 639,554 + -0.8 639,554 + +0.0 639,554 + +0.5 639,554 + -0.3 639,554 + -0.5 639,555 - -0.4 639,576 + +0.3 639,576 + +0.1 639,577 - +0.2 639,898 - GFF1945 0.21 -0.5 639,898 - GFF1945 0.21 -0.2 639,933 + GFF1945 0.24 -0.3 639,933 + GFF1945 0.24 +1.3 639,933 + GFF1945 0.24 -0.8 639,933 + GFF1945 0.24 +1.2 639,934 - GFF1945 0.24 -0.2 639,934 - GFF1945 0.24 +0.4 640,134 + GFF1945 0.41 +0.8 640,308 + GFF1945 0.55 -1.1 640,309 - GFF1945 0.55 +0.0 640,309 - GFF1945 0.55 +0.3 640,309 - GFF1945 0.55 -0.3 640,317 + GFF1945 0.56 +0.4 640,318 - GFF1945 0.56 +0.5 640,318 - GFF1945 0.56 -1.2 640,318 - GFF1945 0.56 +0.5 640,555 - GFF1945 0.76 +1.3 640,555 - GFF1945 0.76 -2.2 640,696 - GFF1945 0.87 +0.3 640,869 - -1.0 641,163 + GFF1946 0.11 +0.9 641,313 + GFF1946 0.22 -0.8 641,313 + GFF1946 0.22 -0.7 641,313 + GFF1946 0.22 +1.0 641,313 + GFF1946 0.22 +0.8 641,313 + GFF1946 0.22 +0.2 641,316 + GFF1946 0.23 +0.7 641,317 - GFF1946 0.23 -0.6 641,317 - GFF1946 0.23 +0.1 641,317 - GFF1946 0.23 -2.3 641,416 - GFF1946 0.30 +0.2 641,416 - GFF1946 0.30 +1.8 641,416 - GFF1946 0.30 -0.9 641,416 - GFF1946 0.30 +0.1 641,457 + GFF1946 0.33 -1.2 641,634 + GFF1946 0.46 -1.2 641,635 - GFF1946 0.46 -0.3 641,635 - GFF1946 0.46 -0.2 641,635 - GFF1946 0.46 +0.2 641,727 + GFF1946 0.53 +0.0
Or see this region's nucleotide sequence