Strain Fitness in Variovorax sp. SCN45 around GFF141

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF140 and GFF141 are separated by 24 nucleotidesGFF141 and GFF142 are separated by 189 nucleotides GFF140 - Putative transport protein, at 168,406 to 169,347 GFF140 GFF141 - Transcriptional regulator, AraC family, at 169,372 to 170,415 GFF141 GFF142 - Oxidoreductase, at 170,605 to 171,657 GFF142 Position (kb) 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2at 168.407 kb on + strandat 168.407 kb on + strandat 168.587 kb on - strand, within GFF140at 168.587 kb on - strand, within GFF140at 168.587 kb on - strand, within GFF140at 168.606 kb on - strand, within GFF140at 168.606 kb on - strand, within GFF140at 168.664 kb on + strand, within GFF140at 168.665 kb on - strand, within GFF140at 168.815 kb on + strand, within GFF140at 168.815 kb on + strand, within GFF140at 168.816 kb on - strand, within GFF140at 168.878 kb on + strand, within GFF140at 168.878 kb on + strand, within GFF140at 168.879 kb on - strand, within GFF140at 169.008 kb on - strand, within GFF140at 169.008 kb on - strand, within GFF140at 169.008 kb on - strand, within GFF140at 169.125 kb on - strand, within GFF140at 169.125 kb on - strand, within GFF140at 169.125 kb on - strand, within GFF140at 169.322 kb on + strandat 169.472 kb on + strandat 169.502 kb on + strand, within GFF141at 169.694 kb on + strand, within GFF141at 169.694 kb on + strand, within GFF141at 169.694 kb on + strand, within GFF141at 169.694 kb on + strand, within GFF141at 169.694 kb on + strand, within GFF141at 169.694 kb on + strand, within GFF141at 169.695 kb on - strand, within GFF141at 169.695 kb on - strand, within GFF141at 169.695 kb on - strand, within GFF141at 169.695 kb on - strand, within GFF141at 169.695 kb on - strand, within GFF141at 169.799 kb on + strand, within GFF141at 169.799 kb on + strand, within GFF141at 169.913 kb on + strand, within GFF141at 169.913 kb on + strand, within GFF141at 169.913 kb on + strand, within GFF141at 169.913 kb on + strand, within GFF141at 169.913 kb on + strand, within GFF141at 169.913 kb on + strand, within GFF141at 169.913 kb on + strand, within GFF141at 169.913 kb on + strand, within GFF141at 169.913 kb on + strand, within GFF141at 169.914 kb on - strand, within GFF141at 169.914 kb on - strand, within GFF141at 169.914 kb on - strand, within GFF141at 169.956 kb on + strand, within GFF141at 169.956 kb on + strand, within GFF141at 169.956 kb on + strand, within GFF141at 169.957 kb on - strand, within GFF141at 169.957 kb on - strand, within GFF141at 170.015 kb on + strand, within GFF141at 170.016 kb on - strand, within GFF141at 170.082 kb on - strand, within GFF141at 170.082 kb on - strand, within GFF141at 170.096 kb on + strand, within GFF141at 170.096 kb on + strand, within GFF141at 170.096 kb on + strand, within GFF141at 170.097 kb on - strand, within GFF141at 170.097 kb on - strand, within GFF141at 170.097 kb on - strand, within GFF141at 170.102 kb on + strand, within GFF141at 170.102 kb on + strand, within GFF141at 170.102 kb on + strand, within GFF141at 170.102 kb on + strand, within GFF141at 170.102 kb on + strand, within GFF141at 170.103 kb on - strand, within GFF141at 170.103 kb on - strand, within GFF141at 170.103 kb on - strand, within GFF141at 170.103 kb on - strand, within GFF141at 170.103 kb on - strand, within GFF141at 170.103 kb on - strand, within GFF141at 170.103 kb on - strand, within GFF141at 170.440 kb on - strandat 170.440 kb on - strandat 170.497 kb on + strandat 170.497 kb on + strandat 170.497 kb on + strandat 170.498 kb on - strandat 170.611 kb on + strandat 170.612 kb on - strandat 170.612 kb on - strandat 170.789 kb on - strand, within GFF142at 171.076 kb on + strand, within GFF142at 171.077 kb on - strand, within GFF142at 171.077 kb on - strand, within GFF142at 171.077 kb on - strand, within GFF142at 171.077 kb on - strand, within GFF142at 171.173 kb on - strand, within GFF142at 171.173 kb on - strand, within GFF142at 171.173 kb on - strand, within GFF142at 171.173 kb on - strand, within GFF142at 171.175 kb on + strand, within GFF142at 171.175 kb on + strand, within GFF142at 171.175 kb on + strand, within GFF142at 171.175 kb on + strand, within GFF142at 171.175 kb on + strand, within GFF142at 171.175 kb on + strand, within GFF142at 171.175 kb on + strand, within GFF142at 171.175 kb on + strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.176 kb on - strand, within GFF142at 171.364 kb on + strand, within GFF142at 171.365 kb on - strand, within GFF142

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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168,407 + -0.1
168,407 + -0.7
168,587 - GFF140 0.19 +0.5
168,587 - GFF140 0.19 +0.0
168,587 - GFF140 0.19 +0.4
168,606 - GFF140 0.21 -1.0
168,606 - GFF140 0.21 +0.9
168,664 + GFF140 0.27 +0.3
168,665 - GFF140 0.27 +0.5
168,815 + GFF140 0.43 -0.1
168,815 + GFF140 0.43 -0.7
168,816 - GFF140 0.44 +0.9
168,878 + GFF140 0.50 -0.5
168,878 + GFF140 0.50 -1.7
168,879 - GFF140 0.50 +0.7
169,008 - GFF140 0.64 +0.2
169,008 - GFF140 0.64 -1.3
169,008 - GFF140 0.64 -0.6
169,125 - GFF140 0.76 -1.0
169,125 - GFF140 0.76 +0.3
169,125 - GFF140 0.76 +0.6
169,322 + -0.0
169,472 + -0.6
169,502 + GFF141 0.12 -0.4
169,694 + GFF141 0.31 -0.1
169,694 + GFF141 0.31 +0.1
169,694 + GFF141 0.31 +0.2
169,694 + GFF141 0.31 -0.3
169,694 + GFF141 0.31 +0.0
169,694 + GFF141 0.31 -0.1
169,695 - GFF141 0.31 -1.0
169,695 - GFF141 0.31 -1.2
169,695 - GFF141 0.31 +0.2
169,695 - GFF141 0.31 -2.2
169,695 - GFF141 0.31 -1.0
169,799 + GFF141 0.41 -0.8
169,799 + GFF141 0.41 -1.0
169,913 + GFF141 0.52 -0.4
169,913 + GFF141 0.52 -0.4
169,913 + GFF141 0.52 +0.1
169,913 + GFF141 0.52 -0.9
169,913 + GFF141 0.52 -0.1
169,913 + GFF141 0.52 +1.8
169,913 + GFF141 0.52 -1.0
169,913 + GFF141 0.52 -1.0
169,913 + GFF141 0.52 -0.3
169,914 - GFF141 0.52 +0.3
169,914 - GFF141 0.52 -0.2
169,914 - GFF141 0.52 -1.9
169,956 + GFF141 0.56 -0.6
169,956 + GFF141 0.56 +0.5
169,956 + GFF141 0.56 -0.8
169,957 - GFF141 0.56 +1.9
169,957 - GFF141 0.56 -0.0
170,015 + GFF141 0.62 -0.3
170,016 - GFF141 0.62 +0.7
170,082 - GFF141 0.68 -0.6
170,082 - GFF141 0.68 -0.7
170,096 + GFF141 0.69 -0.8
170,096 + GFF141 0.69 -0.3
170,096 + GFF141 0.69 -0.2
170,097 - GFF141 0.69 -1.6
170,097 - GFF141 0.69 -0.3
170,097 - GFF141 0.69 +1.7
170,102 + GFF141 0.70 -1.3
170,102 + GFF141 0.70 -1.4
170,102 + GFF141 0.70 +1.6
170,102 + GFF141 0.70 -0.2
170,102 + GFF141 0.70 -0.7
170,103 - GFF141 0.70 -1.6
170,103 - GFF141 0.70 -0.1
170,103 - GFF141 0.70 -0.9
170,103 - GFF141 0.70 +0.2
170,103 - GFF141 0.70 -1.0
170,103 - GFF141 0.70 -0.1
170,103 - GFF141 0.70 -2.0
170,440 - -0.0
170,440 - -0.5
170,497 + -0.1
170,497 + +1.0
170,497 + +1.7
170,498 - -0.0
170,611 + -0.5
170,612 - -0.0
170,612 - -0.5
170,789 - GFF142 0.17 +1.3
171,076 + GFF142 0.45 -0.3
171,077 - GFF142 0.45 +0.2
171,077 - GFF142 0.45 -0.2
171,077 - GFF142 0.45 -0.6
171,077 - GFF142 0.45 -0.7
171,173 - GFF142 0.54 -0.7
171,173 - GFF142 0.54 +0.1
171,173 - GFF142 0.54 +1.6
171,173 - GFF142 0.54 -0.6
171,175 + GFF142 0.54 -2.2
171,175 + GFF142 0.54 +0.8
171,175 + GFF142 0.54 -0.7
171,175 + GFF142 0.54 +0.7
171,175 + GFF142 0.54 +0.3
171,175 + GFF142 0.54 +0.3
171,175 + GFF142 0.54 -0.4
171,175 + GFF142 0.54 -0.5
171,176 - GFF142 0.54 +0.4
171,176 - GFF142 0.54 +0.8
171,176 - GFF142 0.54 -0.2
171,176 - GFF142 0.54 +1.1
171,176 - GFF142 0.54 -0.4
171,176 - GFF142 0.54 -1.7
171,176 - GFF142 0.54 +0.7
171,176 - GFF142 0.54 -1.4
171,176 - GFF142 0.54 -0.4
171,176 - GFF142 0.54 -0.4
171,176 - GFF142 0.54 -0.5
171,364 + GFF142 0.72 -0.7
171,365 - GFF142 0.72 -0.3

Or see this region's nucleotide sequence