Strain Fitness in Variovorax sp. SCN45 around GFF1330

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1327 and GFF1328 overlap by 4 nucleotidesGFF1328 and GFF1329 are separated by 10 nucleotidesGFF1329 and GFF1330 overlap by 4 nucleotidesGFF1330 and GFF1331 are separated by 60 nucleotides GFF1327 - Cell division protein BolA, at 667,495 to 667,788 GFF1327 GFF1328 - Intracellular septation protein IspA, at 667,785 to 668,327 GFF1328 GFF1329 - Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12), at 668,338 to 668,754 GFF1329 GFF1330 - UPF0061 protein YdiU, at 668,751 to 670,232 GFF1330 GFF1331 - Transcriptional regulator, AraC family, at 670,293 to 671,372 GFF1331 Position (kb) 668 669 670 671Strain fitness (log2 ratio) -2 -1 0 1 2at 667.767 kb on + strandat 667.768 kb on - strandat 667.773 kb on + strandat 667.774 kb on - strandat 667.774 kb on - strandat 667.812 kb on - strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 668.384 kb on + strand, within GFF1329at 668.384 kb on + strand, within GFF1329at 668.384 kb on + strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.740 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.806 kb on + strandat 668.807 kb on - strandat 668.807 kb on - strandat 668.831 kb on - strandat 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.079 kb on + strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.080 kb on - strand, within GFF1330at 669.109 kb on + strand, within GFF1330at 669.110 kb on - strand, within GFF1330at 669.110 kb on - strand, within GFF1330at 669.110 kb on - strand, within GFF1330at 669.238 kb on + strand, within GFF1330at 669.238 kb on + strand, within GFF1330at 669.238 kb on + strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.239 kb on - strand, within GFF1330at 669.262 kb on - strand, within GFF1330at 669.262 kb on - strand, within GFF1330at 669.262 kb on - strand, within GFF1330at 669.319 kb on + strand, within GFF1330at 669.319 kb on + strand, within GFF1330at 669.320 kb on - strand, within GFF1330at 669.349 kb on + strand, within GFF1330at 669.350 kb on - strand, within GFF1330at 669.547 kb on + strand, within GFF1330at 669.547 kb on + strand, within GFF1330at 669.547 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.607 kb on + strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.608 kb on - strand, within GFF1330at 669.862 kb on + strand, within GFF1330at 669.862 kb on + strand, within GFF1330at 669.863 kb on - strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.979 kb on + strand, within GFF1330at 669.980 kb on - strand, within GFF1330at 669.980 kb on - strand, within GFF1330at 670.430 kb on + strand, within GFF1331at 670.430 kb on + strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.431 kb on - strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.450 kb on + strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.451 kb on - strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.898 kb on - strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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667,767 + +0.6
667,768 - +0.0
667,773 + -0.8
667,774 - +0.6
667,774 - +0.1
667,812 - +0.5
667,828 + -0.7
667,828 + +0.9
667,828 + -0.0
667,828 + -0.6
667,828 + -0.1
667,828 + +0.4
667,828 + -1.6
667,828 + -1.5
667,829 - +0.9
667,829 - +1.0
667,829 - +0.8
667,829 - -0.8
667,829 - -0.3
667,829 - +0.2
667,829 - -0.5
667,829 - +1.4
667,829 - -0.2
667,829 - -0.6
667,829 - -0.1
667,829 - -0.2
668,384 + GFF1329 0.11 +0.4
668,384 + GFF1329 0.11 -2.0
668,384 + GFF1329 0.11 -1.4
668,385 - GFF1329 0.11 +0.6
668,385 - GFF1329 0.11 +0.4
668,385 - GFF1329 0.11 -1.5
668,385 - GFF1329 0.11 -0.7
668,385 - GFF1329 0.11 -1.0
668,385 - GFF1329 0.11 -2.0
668,603 + GFF1329 0.64 +0.3
668,603 + GFF1329 0.64 -1.6
668,603 + GFF1329 0.64 -0.6
668,603 + GFF1329 0.64 +0.5
668,603 + GFF1329 0.64 -1.2
668,603 + GFF1329 0.64 -1.0
668,604 - GFF1329 0.64 +0.5
668,604 - GFF1329 0.64 -1.0
668,604 - GFF1329 0.64 -0.1
668,604 - GFF1329 0.64 -0.2
668,604 - GFF1329 0.64 -1.2
668,604 - GFF1329 0.64 -0.2
668,604 - GFF1329 0.64 -0.3
668,604 - GFF1329 0.64 -0.2
668,604 - GFF1329 0.64 -1.0
668,630 + GFF1329 0.70 -0.3
668,630 + GFF1329 0.70 -0.3
668,630 + GFF1329 0.70 -0.9
668,630 + GFF1329 0.70 -0.9
668,630 + GFF1329 0.70 +0.3
668,631 - GFF1329 0.70 -1.3
668,631 - GFF1329 0.70 +0.0
668,631 - GFF1329 0.70 -0.2
668,740 + +2.4
668,806 + -1.0
668,806 + -0.8
668,806 + -0.4
668,806 + -0.3
668,806 + +0.6
668,806 + -0.1
668,806 + -0.4
668,807 - -0.8
668,807 - -0.2
668,831 - -0.2
669,079 + GFF1330 0.22 -0.3
669,079 + GFF1330 0.22 +0.1
669,079 + GFF1330 0.22 -1.4
669,079 + GFF1330 0.22 -0.1
669,079 + GFF1330 0.22 -1.4
669,079 + GFF1330 0.22 +0.0
669,079 + GFF1330 0.22 -1.0
669,079 + GFF1330 0.22 -0.1
669,080 - GFF1330 0.22 -0.2
669,080 - GFF1330 0.22 +0.2
669,080 - GFF1330 0.22 -0.6
669,080 - GFF1330 0.22 +1.1
669,080 - GFF1330 0.22 +1.0
669,080 - GFF1330 0.22 -0.7
669,109 + GFF1330 0.24 +0.0
669,110 - GFF1330 0.24 -2.4
669,110 - GFF1330 0.24 -0.7
669,110 - GFF1330 0.24 +0.4
669,238 + GFF1330 0.33 -0.7
669,238 + GFF1330 0.33 +0.1
669,238 + GFF1330 0.33 +0.6
669,239 - GFF1330 0.33 +0.7
669,239 - GFF1330 0.33 -0.2
669,239 - GFF1330 0.33 -2.3
669,239 - GFF1330 0.33 -0.6
669,239 - GFF1330 0.33 -0.9
669,239 - GFF1330 0.33 -1.6
669,262 - GFF1330 0.34 -0.2
669,262 - GFF1330 0.34 -0.0
669,262 - GFF1330 0.34 +0.4
669,319 + GFF1330 0.38 -0.3
669,319 + GFF1330 0.38 -0.6
669,320 - GFF1330 0.38 -0.1
669,349 + GFF1330 0.40 -0.6
669,350 - GFF1330 0.40 +1.6
669,547 + GFF1330 0.54 -2.2
669,547 + GFF1330 0.54 -0.5
669,547 + GFF1330 0.54 -1.4
669,607 + GFF1330 0.58 -0.1
669,607 + GFF1330 0.58 -0.8
669,607 + GFF1330 0.58 -0.6
669,607 + GFF1330 0.58 -0.4
669,607 + GFF1330 0.58 -0.1
669,607 + GFF1330 0.58 -0.6
669,607 + GFF1330 0.58 -0.7
669,607 + GFF1330 0.58 +0.6
669,608 - GFF1330 0.58 -0.2
669,608 - GFF1330 0.58 -0.6
669,608 - GFF1330 0.58 -1.4
669,608 - GFF1330 0.58 +1.0
669,608 - GFF1330 0.58 -0.8
669,608 - GFF1330 0.58 -0.3
669,608 - GFF1330 0.58 +0.4
669,862 + GFF1330 0.75 -0.5
669,862 + GFF1330 0.75 -1.3
669,863 - GFF1330 0.75 +1.4
669,979 + GFF1330 0.83 +1.7
669,979 + GFF1330 0.83 -1.0
669,979 + GFF1330 0.83 -0.5
669,979 + GFF1330 0.83 +0.7
669,979 + GFF1330 0.83 -1.0
669,979 + GFF1330 0.83 +1.1
669,980 - GFF1330 0.83 -0.3
669,980 - GFF1330 0.83 +0.0
670,430 + GFF1331 0.13 -0.2
670,430 + GFF1331 0.13 -0.2
670,431 - GFF1331 0.13 +0.8
670,431 - GFF1331 0.13 +0.7
670,431 - GFF1331 0.13 -0.6
670,431 - GFF1331 0.13 -1.0
670,431 - GFF1331 0.13 -0.5
670,450 + GFF1331 0.15 -0.6
670,450 + GFF1331 0.15 +0.0
670,450 + GFF1331 0.15 +0.0
670,450 + GFF1331 0.15 -0.2
670,450 + GFF1331 0.15 +1.0
670,450 + GFF1331 0.15 +0.4
670,451 - GFF1331 0.15 -0.2
670,451 - GFF1331 0.15 -0.0
670,451 - GFF1331 0.15 +0.9
670,451 - GFF1331 0.15 -2.5
670,451 - GFF1331 0.15 -0.0
670,451 - GFF1331 0.15 +0.6
670,451 - GFF1331 0.15 +0.4
670,699 + GFF1331 0.38 +0.2
670,699 + GFF1331 0.38 -0.0
670,699 + GFF1331 0.38 -0.2
670,699 + GFF1331 0.38 -0.4
670,699 + GFF1331 0.38 -0.4
670,699 + GFF1331 0.38 -0.4
670,699 + GFF1331 0.38 -0.6
670,700 - GFF1331 0.38 +0.6
670,700 - GFF1331 0.38 +1.4
670,700 - GFF1331 0.38 -1.2
670,700 - GFF1331 0.38 -1.8
670,700 - GFF1331 0.38 -0.8
670,700 - GFF1331 0.38 +0.6
670,898 - GFF1331 0.56 +0.4
671,014 + GFF1331 0.67 -1.1
671,014 + GFF1331 0.67 -0.2
671,014 + GFF1331 0.67 +1.1
671,014 + GFF1331 0.67 -0.6
671,015 - GFF1331 0.67 -0.1
671,015 - GFF1331 0.67 +0.7
671,015 - GFF1331 0.67 -0.5
671,015 - GFF1331 0.67 -1.0

Or see this region's nucleotide sequence