Strain Fitness in Variovorax sp. SCN45 around GFF11

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
11,597	+		GFF10	0.78	-0.4
11,597	+		GFF10	0.78	+0.3
11,598	-		GFF10	0.78	-0.4
11,598	-		GFF10	0.78	+0.7
11,940	-				-0.6
12,166	+		GFF11	0.19	-1.0
12,166	+		GFF11	0.19	-1.4
12,166	+		GFF11	0.19	+1.3
12,167	-		GFF11	0.19	-1.0
12,325	+		GFF11	0.41	-0.3
12,325	+		GFF11	0.41	-1.5
12,326	-		GFF11	0.41	-0.7
12,493	+		GFF11	0.65	-0.6
12,739	+				+0.1
12,739	+				+0.2
12,739	+				-0.7
12,739	+				-1.4
12,739	+				+0.1
12,739	+				-0.5
12,740	-				-0.3
12,740	-				-0.1
12,815	+				-0.3
12,815	+				-0.7
12,815	+				+2.1
12,815	+				-1.1
12,816	-				+0.7
12,816	-				-0.9
12,816	-				-0.3
12,816	-				-0.4
12,816	-				+0.1
12,816	-				+0.2
13,569	-		GFF12	0.59	-0.0
13,569	-		GFF12	0.59	-0.3
13,569	-		GFF12	0.59	-1.0