Strain Fitness in Variovorax sp. SCN45 around GFF1098

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1096 and GFF1097 are separated by 28 nucleotidesGFF1097 and GFF1098 are separated by 44 nucleotidesGFF1098 and GFF1099 are separated by 19 nucleotides GFF1096 - Phosphate transport system regulatory protein PhoU, at 408,618 to 409,319 GFF1096 GFF1097 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 409,348 to 410,040 GFF1097 GFF1098 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 410,085 to 411,428 GFF1098 GFF1099 - Na+-driven multidrug efflux pump, at 411,448 to 412,800 GFF1099 Position (kb) 410 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.301 kb on - strandat 409.301 kb on - strandat 409.317 kb on + strandat 409.318 kb on - strandat 409.318 kb on - strandat 409.318 kb on - strandat 409.654 kb on + strand, within GFF1097at 409.654 kb on + strand, within GFF1097at 409.654 kb on + strand, within GFF1097at 409.654 kb on + strand, within GFF1097at 409.655 kb on - strand, within GFF1097at 409.655 kb on - strand, within GFF1097at 409.675 kb on - strand, within GFF1097at 409.731 kb on - strand, within GFF1097at 409.843 kb on + strand, within GFF1097at 409.844 kb on - strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.915 kb on + strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 409.916 kb on - strand, within GFF1097at 410.074 kb on - strandat 410.538 kb on + strand, within GFF1098at 410.538 kb on + strand, within GFF1098at 410.538 kb on + strand, within GFF1098at 410.556 kb on + strand, within GFF1098at 410.556 kb on + strand, within GFF1098at 410.557 kb on - strand, within GFF1098at 410.646 kb on + strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.827 kb on - strand, within GFF1098at 411.109 kb on - strand, within GFF1098at 411.171 kb on + strand, within GFF1098at 411.171 kb on + strand, within GFF1098at 411.171 kb on + strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.426 kb on + strandat 411.426 kb on + strandat 411.426 kb on + strandat 411.427 kb on - strandat 411.427 kb on - strandat 411.427 kb on - strandat 411.427 kb on - strandat 411.582 kb on - strandat 411.582 kb on - strandat 411.582 kb on - strandat 411.593 kb on + strand, within GFF1099at 411.593 kb on + strand, within GFF1099at 411.593 kb on + strand, within GFF1099at 411.593 kb on + strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.713 kb on + strand, within GFF1099at 411.713 kb on + strand, within GFF1099at 411.713 kb on + strand, within GFF1099at 411.713 kb on + strand, within GFF1099at 411.714 kb on - strand, within GFF1099at 411.714 kb on - strand, within GFF1099at 411.714 kb on - strand, within GFF1099at 411.714 kb on - strand, within GFF1099at 411.773 kb on + strand, within GFF1099at 411.774 kb on - strand, within GFF1099at 411.774 kb on - strand, within GFF1099at 411.774 kb on - strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 412.151 kb on + strand, within GFF1099at 412.151 kb on + strand, within GFF1099at 412.152 kb on - strand, within GFF1099at 412.152 kb on - strand, within GFF1099at 412.152 kb on - strand, within GFF1099at 412.152 kb on - strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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409,143 + GFF1096 0.75 -0.9
409,143 + GFF1096 0.75 +0.8
409,143 + GFF1096 0.75 -1.0
409,143 + GFF1096 0.75 -3.2
409,143 + GFF1096 0.75 +0.1
409,143 + GFF1096 0.75 -0.4
409,143 + GFF1096 0.75 -0.0
409,143 + GFF1096 0.75 -1.0
409,143 + GFF1096 0.75 -1.0
409,143 + GFF1096 0.75 +0.1
409,143 + GFF1096 0.75 -0.1
409,143 + GFF1096 0.75 +0.1
409,143 - GFF1096 0.75 -0.2
409,144 - GFF1096 0.75 -0.4
409,144 - GFF1096 0.75 -0.5
409,144 - GFF1096 0.75 -0.4
409,144 - GFF1096 0.75 -0.1
409,144 - GFF1096 0.75 -0.2
409,144 - GFF1096 0.75 -1.0
409,144 - GFF1096 0.75 -0.7
409,144 - GFF1096 0.75 -0.8
409,144 - GFF1096 0.75 -0.5
409,144 - GFF1096 0.75 -0.9
409,144 - GFF1096 0.75 +0.1
409,144 - GFF1096 0.75 +1.4
409,144 - GFF1096 0.75 +1.5
409,144 - GFF1096 0.75 +2.4
409,254 + -1.0
409,254 + -0.5
409,254 + +0.3
409,254 + -2.5
409,254 + -1.0
409,254 + -0.1
409,254 + +0.1
409,254 + +0.4
409,254 + +0.8
409,254 + -0.6
409,254 + +0.4
409,254 + +0.9
409,254 + -0.8
409,254 + +0.1
409,254 + +1.4
409,255 - -0.1
409,255 - +1.8
409,255 - +0.3
409,255 - -0.2
409,255 - -1.9
409,255 - -0.6
409,300 + +0.4
409,300 + +0.1
409,300 + -2.0
409,300 + +1.2
409,301 - +1.0
409,301 - -1.6
409,317 + -0.1
409,318 - +0.4
409,318 - -0.1
409,318 - -0.5
409,654 + GFF1097 0.44 -0.8
409,654 + GFF1097 0.44 -0.4
409,654 + GFF1097 0.44 +0.1
409,654 + GFF1097 0.44 -0.6
409,655 - GFF1097 0.44 +1.6
409,655 - GFF1097 0.44 -0.6
409,675 - GFF1097 0.47 +0.0
409,731 - GFF1097 0.55 -0.2
409,843 + GFF1097 0.71 -0.6
409,844 - GFF1097 0.72 -0.9
409,915 + GFF1097 0.82 -0.3
409,915 + GFF1097 0.82 +1.1
409,915 + GFF1097 0.82 +0.0
409,915 + GFF1097 0.82 +1.4
409,916 - GFF1097 0.82 -1.3
409,916 - GFF1097 0.82 -0.4
409,916 - GFF1097 0.82 +0.2
409,916 - GFF1097 0.82 +1.3
409,916 - GFF1097 0.82 -0.1
409,916 - GFF1097 0.82 +0.0
409,916 - GFF1097 0.82 +0.3
409,916 - GFF1097 0.82 -0.6
409,916 - GFF1097 0.82 +0.4
409,916 - GFF1097 0.82 -0.6
409,916 - GFF1097 0.82 -0.3
410,074 - -0.3
410,538 + GFF1098 0.34 -0.6
410,538 + GFF1098 0.34 -0.2
410,538 + GFF1098 0.34 -2.0
410,556 + GFF1098 0.35 +0.4
410,556 + GFF1098 0.35 -0.4
410,557 - GFF1098 0.35 -0.8
410,646 + GFF1098 0.42 -0.2
410,647 - GFF1098 0.42 -0.7
410,647 - GFF1098 0.42 +0.7
410,647 - GFF1098 0.42 +0.6
410,647 - GFF1098 0.42 +0.2
410,827 - GFF1098 0.55 -1.4
411,109 - GFF1098 0.76 -0.1
411,171 + GFF1098 0.81 -0.2
411,171 + GFF1098 0.81 -1.4
411,171 + GFF1098 0.81 +0.1
411,172 - GFF1098 0.81 +0.3
411,172 - GFF1098 0.81 +0.3
411,172 - GFF1098 0.81 -0.2
411,172 - GFF1098 0.81 -1.8
411,172 - GFF1098 0.81 -0.5
411,172 - GFF1098 0.81 -0.4
411,172 - GFF1098 0.81 -0.2
411,238 - GFF1098 0.86 -1.7
411,238 - GFF1098 0.86 -2.0
411,238 - GFF1098 0.86 +0.9
411,238 - GFF1098 0.86 +0.0
411,238 - GFF1098 0.86 -0.6
411,426 + +0.3
411,426 + -0.2
411,426 + +0.7
411,427 - +0.1
411,427 - -0.5
411,427 - -0.8
411,427 - -1.3
411,582 - -0.6
411,582 - -1.9
411,582 - +1.1
411,593 + GFF1099 0.11 -1.0
411,593 + GFF1099 0.11 +0.1
411,593 + GFF1099 0.11 -0.7
411,593 + GFF1099 0.11 -0.6
411,594 - GFF1099 0.11 -0.7
411,594 - GFF1099 0.11 -0.2
411,594 - GFF1099 0.11 -1.9
411,594 - GFF1099 0.11 -0.6
411,594 - GFF1099 0.11 -0.0
411,632 + GFF1099 0.14 -0.1
411,632 + GFF1099 0.14 -3.3
411,632 + GFF1099 0.14 -0.8
411,632 + GFF1099 0.14 +0.3
411,632 + GFF1099 0.14 -0.3
411,632 + GFF1099 0.14 -0.3
411,632 + GFF1099 0.14 -0.9
411,633 - GFF1099 0.14 -2.5
411,633 - GFF1099 0.14 -1.4
411,633 - GFF1099 0.14 -0.2
411,633 - GFF1099 0.14 +0.3
411,633 - GFF1099 0.14 +0.1
411,633 - GFF1099 0.14 +0.1
411,633 - GFF1099 0.14 -0.2
411,713 + GFF1099 0.20 -0.9
411,713 + GFF1099 0.20 +2.6
411,713 + GFF1099 0.20 -0.0
411,713 + GFF1099 0.20 -0.2
411,714 - GFF1099 0.20 -0.2
411,714 - GFF1099 0.20 -0.1
411,714 - GFF1099 0.20 +0.5
411,714 - GFF1099 0.20 -0.3
411,773 + GFF1099 0.24 -1.4
411,774 - GFF1099 0.24 -0.1
411,774 - GFF1099 0.24 +0.6
411,774 - GFF1099 0.24 -0.4
411,950 + GFF1099 0.37 +0.2
411,950 + GFF1099 0.37 -0.9
411,950 + GFF1099 0.37 +0.2
411,950 + GFF1099 0.37 +1.4
411,950 + GFF1099 0.37 -0.2
411,950 + GFF1099 0.37 -0.8
411,950 + GFF1099 0.37 -1.4
411,950 + GFF1099 0.37 +0.4
411,950 + GFF1099 0.37 -1.1
411,950 + GFF1099 0.37 -0.8
411,950 + GFF1099 0.37 +0.2
411,950 + GFF1099 0.37 -1.0
411,950 + GFF1099 0.37 -0.2
411,950 + GFF1099 0.37 +0.9
411,950 + GFF1099 0.37 -1.0
411,950 + GFF1099 0.37 +1.2
411,950 + GFF1099 0.37 +0.0
411,950 + GFF1099 0.37 -1.8
411,950 + GFF1099 0.37 +0.1
411,950 + GFF1099 0.37 -0.6
411,950 + GFF1099 0.37 +0.7
411,950 + GFF1099 0.37 +1.2
411,950 + GFF1099 0.37 +0.8
411,950 + GFF1099 0.37 -1.4
411,951 - GFF1099 0.37 +0.0
411,951 - GFF1099 0.37 -0.4
411,951 - GFF1099 0.37 -0.5
411,951 - GFF1099 0.37 -1.0
411,951 - GFF1099 0.37 -0.6
411,951 - GFF1099 0.37 -0.8
411,951 - GFF1099 0.37 -0.1
411,951 - GFF1099 0.37 -0.4
411,951 - GFF1099 0.37 +0.3
411,951 - GFF1099 0.37 +0.4
411,951 - GFF1099 0.37 +0.4
412,151 + GFF1099 0.52 -0.8
412,151 + GFF1099 0.52 -0.3
412,152 - GFF1099 0.52 -0.2
412,152 - GFF1099 0.52 -1.5
412,152 - GFF1099 0.52 -0.1
412,152 - GFF1099 0.52 -0.7
412,415 + GFF1099 0.71 -0.8
412,415 + GFF1099 0.71 -0.2
412,415 + GFF1099 0.71 -0.0
412,415 + GFF1099 0.71 -0.5
412,415 + GFF1099 0.71 -0.7
412,415 + GFF1099 0.71 +0.4
412,416 - GFF1099 0.72 +0.9
412,416 - GFF1099 0.72 -0.4
412,416 - GFF1099 0.72 -0.9
412,416 - GFF1099 0.72 -1.0
412,416 - GFF1099 0.72 -0.8
412,416 - GFF1099 0.72 -1.2
412,416 - GFF1099 0.72 -0.4
412,416 - GFF1099 0.72 -0.2

Or see this region's nucleotide sequence