Strain Fitness in Variovorax sp. SCN45 around GFF1095

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1093 and GFF1094 overlap by 4 nucleotidesGFF1094 and GFF1095 are separated by 17 nucleotidesGFF1095 and GFF1096 are separated by 16 nucleotidesGFF1096 and GFF1097 are separated by 28 nucleotides GFF1093 - Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1), at 405,838 to 406,920 GFF1093 GFF1094 - Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1), at 406,917 to 407,804 GFF1094 GFF1095 - Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1), at 407,822 to 408,601 GFF1095 GFF1096 - Phosphate transport system regulatory protein PhoU, at 408,618 to 409,319 GFF1096 GFF1097 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 409,348 to 410,040 GFF1097 Position (kb) 407 408 409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 406.822 kb on + strandat 406.822 kb on + strandat 406.823 kb on - strandat 406.849 kb on - strandat 406.849 kb on - strandat 406.849 kb on - strandat 407.080 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.250 kb on + strand, within GFF1094at 407.251 kb on - strand, within GFF1094at 407.251 kb on - strand, within GFF1094at 407.341 kb on - strand, within GFF1094at 407.358 kb on + strand, within GFF1094at 407.481 kb on + strand, within GFF1094at 407.481 kb on + strand, within GFF1094at 407.482 kb on - strand, within GFF1094at 407.482 kb on - strand, within GFF1094at 407.701 kb on - strand, within GFF1094at 407.768 kb on + strandat 407.769 kb on - strandat 407.769 kb on - strandat 407.802 kb on + strandat 407.802 kb on + strandat 407.882 kb on + strandat 407.882 kb on + strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.886 kb on - strandat 408.014 kb on + strand, within GFF1095at 408.434 kb on + strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.489 kb on - strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.578 kb on + strandat 408.578 kb on + strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.726 kb on + strand, within GFF1096at 408.727 kb on - strand, within GFF1096at 408.727 kb on - strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.301 kb on - strandat 409.301 kb on - strandat 409.317 kb on + strandat 409.318 kb on - strandat 409.318 kb on - strandat 409.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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406,822 + -1.9
406,822 + +0.3
406,823 - -0.4
406,849 - -0.4
406,849 - -0.1
406,849 - +2.0
407,080 + GFF1094 0.18 -2.4
407,238 + GFF1094 0.36 -0.1
407,238 + GFF1094 0.36 +0.9
407,238 + GFF1094 0.36 -0.6
407,238 + GFF1094 0.36 -1.6
407,238 + GFF1094 0.36 +0.6
407,238 + GFF1094 0.36 +0.4
407,239 - GFF1094 0.36 -0.8
407,239 - GFF1094 0.36 -0.2
407,239 - GFF1094 0.36 +0.4
407,250 + GFF1094 0.38 -0.2
407,251 - GFF1094 0.38 -2.2
407,251 - GFF1094 0.38 +0.8
407,341 - GFF1094 0.48 +2.1
407,358 + GFF1094 0.50 -1.5
407,481 + GFF1094 0.64 -0.1
407,481 + GFF1094 0.64 +2.4
407,482 - GFF1094 0.64 -0.1
407,482 - GFF1094 0.64 +0.2
407,701 - GFF1094 0.88 -0.1
407,768 + -0.1
407,769 - -0.4
407,769 - +0.4
407,802 + -0.8
407,802 + -1.2
407,882 + +0.8
407,882 + -0.2
407,883 - -0.0
407,883 - +0.6
407,883 - +0.4
407,886 - +1.2
408,014 + GFF1095 0.25 -1.7
408,434 + GFF1095 0.78 -0.4
408,435 - GFF1095 0.79 +0.7
408,435 - GFF1095 0.79 -0.3
408,457 + GFF1095 0.81 -0.5
408,457 + GFF1095 0.81 -0.9
408,457 + GFF1095 0.81 -1.4
408,458 - GFF1095 0.82 +0.7
408,458 - GFF1095 0.82 +1.1
408,458 - GFF1095 0.82 +0.3
408,489 - GFF1095 0.86 -0.7
408,497 + GFF1095 0.87 -0.5
408,497 + GFF1095 0.87 -1.0
408,497 + GFF1095 0.87 -2.2
408,497 + GFF1095 0.87 -0.2
408,498 - GFF1095 0.87 -0.8
408,498 - GFF1095 0.87 -0.2
408,498 - GFF1095 0.87 -0.9
408,498 - GFF1095 0.87 +0.4
408,498 - GFF1095 0.87 -0.1
408,498 - GFF1095 0.87 -0.2
408,498 - GFF1095 0.87 -0.3
408,498 - GFF1095 0.87 -0.3
408,503 + GFF1095 0.87 +0.7
408,503 + GFF1095 0.87 -0.9
408,504 - GFF1095 0.87 -1.7
408,504 - GFF1095 0.87 +0.2
408,578 + -0.2
408,578 + -0.4
408,579 - +0.5
408,579 - -0.4
408,579 - +0.2
408,579 - -1.6
408,579 - -0.0
408,726 + GFF1096 0.15 +0.7
408,727 - GFF1096 0.16 -1.1
408,727 - GFF1096 0.16 -0.0
409,143 + GFF1096 0.75 -0.9
409,143 + GFF1096 0.75 +0.8
409,143 + GFF1096 0.75 -1.0
409,143 + GFF1096 0.75 -3.2
409,143 + GFF1096 0.75 +0.1
409,143 + GFF1096 0.75 -0.4
409,143 + GFF1096 0.75 -0.0
409,143 + GFF1096 0.75 -1.0
409,143 + GFF1096 0.75 -1.0
409,143 + GFF1096 0.75 +0.1
409,143 + GFF1096 0.75 -0.1
409,143 + GFF1096 0.75 +0.1
409,143 - GFF1096 0.75 -0.2
409,144 - GFF1096 0.75 -0.4
409,144 - GFF1096 0.75 -0.5
409,144 - GFF1096 0.75 -0.4
409,144 - GFF1096 0.75 -0.1
409,144 - GFF1096 0.75 -0.2
409,144 - GFF1096 0.75 -1.0
409,144 - GFF1096 0.75 -0.7
409,144 - GFF1096 0.75 -0.8
409,144 - GFF1096 0.75 -0.5
409,144 - GFF1096 0.75 -0.9
409,144 - GFF1096 0.75 +0.1
409,144 - GFF1096 0.75 +1.4
409,144 - GFF1096 0.75 +1.5
409,144 - GFF1096 0.75 +2.4
409,254 + -1.0
409,254 + -0.5
409,254 + +0.3
409,254 + -2.5
409,254 + -1.0
409,254 + -0.1
409,254 + +0.1
409,254 + +0.4
409,254 + +0.8
409,254 + -0.6
409,254 + +0.4
409,254 + +0.9
409,254 + -0.8
409,254 + +0.1
409,254 + +1.4
409,255 - -0.1
409,255 - +1.8
409,255 - +0.3
409,255 - -0.2
409,255 - -1.9
409,255 - -0.6
409,300 + +0.4
409,300 + +0.1
409,300 + -2.0
409,300 + +1.2
409,301 - +1.0
409,301 - -1.6
409,317 + -0.1
409,318 - +0.4
409,318 - -0.1
409,318 - -0.5

Or see this region's nucleotide sequence