Strain Fitness in Variovorax sp. SCN45 around GFF828

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF826 and GFF827 are separated by 200 nucleotidesGFF827 and GFF828 are separated by 115 nucleotidesGFF828 and GFF829 are separated by 20 nucleotides GFF826 - no description, at 130,827 to 130,979 GFF826 GFF827 - Predicted cobalt transporter CbtC, at 131,180 to 131,857 GFF827 GFF828 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 131,973 to 133,040 GFF828 GFF829 - Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2), at 133,061 to 136,879 GFF829 Position (kb) 131 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 131.078 kb on + strandat 131.078 kb on + strandat 131.078 kb on + strandat 131.079 kb on - strandat 131.079 kb on - strandat 131.174 kb on + strandat 131.174 kb on + strandat 131.174 kb on + strandat 131.174 kb on + strandat 131.175 kb on - strandat 131.175 kb on - strandat 131.175 kb on - strandat 131.228 kb on + strandat 131.228 kb on + strandat 131.228 kb on + strandat 131.228 kb on + strandat 131.228 kb on + strandat 131.228 kb on + strandat 131.228 kb on + strandat 131.229 kb on - strandat 131.229 kb on - strandat 131.229 kb on - strandat 131.229 kb on - strandat 131.255 kb on + strand, within GFF827at 131.255 kb on + strand, within GFF827at 131.255 kb on + strand, within GFF827at 131.255 kb on + strand, within GFF827at 131.255 kb on + strand, within GFF827at 131.256 kb on - strand, within GFF827at 131.256 kb on - strand, within GFF827at 131.256 kb on - strand, within GFF827at 131.510 kb on + strand, within GFF827at 131.510 kb on + strand, within GFF827at 131.510 kb on + strand, within GFF827at 131.511 kb on - strand, within GFF827at 131.511 kb on - strand, within GFF827at 131.511 kb on - strand, within GFF827at 131.594 kb on + strand, within GFF827at 131.594 kb on + strand, within GFF827at 131.594 kb on + strand, within GFF827at 131.594 kb on + strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.595 kb on - strand, within GFF827at 131.609 kb on + strand, within GFF827at 131.610 kb on - strand, within GFF827at 131.610 kb on - strand, within GFF827at 131.610 kb on - strand, within GFF827at 131.610 kb on - strand, within GFF827at 131.639 kb on + strand, within GFF827at 131.640 kb on - strand, within GFF827at 131.640 kb on - strand, within GFF827at 131.640 kb on - strand, within GFF827at 131.681 kb on + strand, within GFF827at 131.682 kb on - strand, within GFF827at 131.682 kb on - strand, within GFF827at 131.682 kb on - strand, within GFF827at 131.682 kb on - strand, within GFF827at 131.682 kb on - strand, within GFF827at 131.738 kb on + strand, within GFF827at 131.738 kb on + strand, within GFF827at 131.739 kb on - strand, within GFF827at 131.739 kb on - strand, within GFF827at 132.192 kb on + strand, within GFF828at 132.192 kb on + strand, within GFF828at 132.192 kb on + strand, within GFF828at 132.192 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.838 kb on - strand, within GFF828at 133.253 kb on + strandat 133.253 kb on + strandat 133.253 kb on + strandat 133.253 kb on + strandat 133.253 kb on + strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.283 kb on + strandat 133.283 kb on + strandat 133.283 kb on + strandat 133.284 kb on - strandat 133.284 kb on - strandat 133.284 kb on - strandat 133.284 kb on - strandat 133.284 kb on - strandat 133.356 kb on - strandat 133.456 kb on + strand, within GFF829at 133.457 kb on - strand, within GFF829at 133.493 kb on + strand, within GFF829at 133.493 kb on + strand, within GFF829at 133.493 kb on + strand, within GFF829at 133.493 kb on + strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.709 kb on + strand, within GFF829at 133.709 kb on + strand, within GFF829at 133.709 kb on + strand, within GFF829at 133.710 kb on - strand, within GFF829at 133.710 kb on - strand, within GFF829at 133.710 kb on - strand, within GFF829

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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131,078 + -1.0
131,078 + -0.2
131,078 + -0.5
131,079 - -0.4
131,079 - -2.0
131,174 + -1.6
131,174 + -0.4
131,174 + +0.0
131,174 + -0.5
131,175 - +1.5
131,175 - -1.1
131,175 - +2.0
131,228 + +0.3
131,228 + +0.2
131,228 + +0.0
131,228 + -0.7
131,228 + -1.0
131,228 + -1.2
131,228 + -0.8
131,229 - +0.9
131,229 - -1.0
131,229 - -1.8
131,229 - -0.5
131,255 + GFF827 0.11 -0.3
131,255 + GFF827 0.11 +2.1
131,255 + GFF827 0.11 +0.4
131,255 + GFF827 0.11 -1.6
131,255 + GFF827 0.11 -0.8
131,256 - GFF827 0.11 +1.9
131,256 - GFF827 0.11 -0.1
131,256 - GFF827 0.11 -0.3
131,510 + GFF827 0.49 -1.0
131,510 + GFF827 0.49 +1.1
131,510 + GFF827 0.49 -0.8
131,511 - GFF827 0.49 -1.3
131,511 - GFF827 0.49 -0.3
131,511 - GFF827 0.49 +2.1
131,594 + GFF827 0.61 -1.6
131,594 + GFF827 0.61 +0.2
131,594 + GFF827 0.61 +1.8
131,594 + GFF827 0.61 -0.6
131,595 - GFF827 0.61 -1.4
131,595 - GFF827 0.61 -0.9
131,595 - GFF827 0.61 +0.9
131,595 - GFF827 0.61 -0.7
131,595 - GFF827 0.61 +1.5
131,595 - GFF827 0.61 -0.0
131,595 - GFF827 0.61 +0.2
131,595 - GFF827 0.61 +2.0
131,595 - GFF827 0.61 -0.4
131,595 - GFF827 0.61 +0.1
131,595 - GFF827 0.61 +0.4
131,595 - GFF827 0.61 -1.8
131,595 - GFF827 0.61 -0.3
131,609 + GFF827 0.63 -0.0
131,610 - GFF827 0.63 -0.8
131,610 - GFF827 0.63 +1.0
131,610 - GFF827 0.63 +0.7
131,610 - GFF827 0.63 -0.7
131,639 + GFF827 0.68 -0.5
131,640 - GFF827 0.68 +1.5
131,640 - GFF827 0.68 +0.5
131,640 - GFF827 0.68 -0.5
131,681 + GFF827 0.74 -0.2
131,682 - GFF827 0.74 -0.1
131,682 - GFF827 0.74 -0.8
131,682 - GFF827 0.74 -1.9
131,682 - GFF827 0.74 -0.5
131,682 - GFF827 0.74 +1.0
131,738 + GFF827 0.82 +1.2
131,738 + GFF827 0.82 +0.5
131,739 - GFF827 0.82 -1.2
131,739 - GFF827 0.82 -1.1
132,192 + GFF828 0.21 +3.5
132,192 + GFF828 0.21 +0.3
132,192 + GFF828 0.21 -0.4
132,192 + GFF828 0.21 +0.4
132,837 + GFF828 0.81 +1.1
132,837 + GFF828 0.81 +0.2
132,837 + GFF828 0.81 -1.0
132,837 + GFF828 0.81 +0.7
132,837 + GFF828 0.81 -0.1
132,837 + GFF828 0.81 -0.1
132,838 - GFF828 0.81 -0.9
133,253 + +1.5
133,253 + -1.2
133,253 + +0.5
133,253 + -2.9
133,253 + -0.3
133,254 - +0.2
133,254 - -2.7
133,254 - -0.6
133,254 - -0.5
133,254 - -0.6
133,254 - +0.6
133,254 - -2.3
133,283 + -0.2
133,283 + -0.3
133,283 + +0.0
133,284 - -0.6
133,284 - +0.2
133,284 - +0.5
133,284 - +0.3
133,284 - +1.5
133,356 - -0.7
133,456 + GFF829 0.10 -0.8
133,457 - GFF829 0.10 -0.3
133,493 + GFF829 0.11 -0.3
133,493 + GFF829 0.11 -0.1
133,493 + GFF829 0.11 -0.3
133,493 + GFF829 0.11 -0.5
133,494 - GFF829 0.11 +0.2
133,494 - GFF829 0.11 -0.6
133,494 - GFF829 0.11 +0.5
133,494 - GFF829 0.11 +0.8
133,494 - GFF829 0.11 -1.8
133,494 - GFF829 0.11 -0.0
133,709 + GFF829 0.17 -0.8
133,709 + GFF829 0.17 -0.8
133,709 + GFF829 0.17 +0.2
133,710 - GFF829 0.17 +0.9
133,710 - GFF829 0.17 -0.5
133,710 - GFF829 0.17 -0.1

Or see this region's nucleotide sequence