Strain Fitness in Variovorax sp. SCN45 around GFF767

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF766 and GFF767 overlap by 4 nucleotidesGFF767 and GFF768 are separated by 14 nucleotides GFF766 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 30,494 to 32,404 GFF766 GFF767 - Alpha-amylase (EC 3.2.1.1), at 32,401 to 34,470 GFF767 GFF768 - Trehalose synthase (EC 5.4.99.16), at 34,485 to 37,829 GFF768 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 31.442 kb on + strand, within GFF766at 31.442 kb on + strand, within GFF766at 31.443 kb on - strand, within GFF766at 31.443 kb on - strand, within GFF766at 31.443 kb on - strand, within GFF766at 31.547 kb on + strand, within GFF766at 31.682 kb on + strand, within GFF766at 31.683 kb on - strand, within GFF766at 31.683 kb on - strand, within GFF766at 31.683 kb on - strand, within GFF766at 31.683 kb on - strand, within GFF766at 31.712 kb on + strand, within GFF766at 31.712 kb on + strand, within GFF766at 31.712 kb on + strand, within GFF766at 31.712 kb on + strand, within GFF766at 31.713 kb on - strand, within GFF766at 31.713 kb on - strand, within GFF766at 31.713 kb on - strand, within GFF766at 31.745 kb on + strand, within GFF766at 31.745 kb on + strand, within GFF766at 31.745 kb on + strand, within GFF766at 31.745 kb on + strand, within GFF766at 31.745 kb on + strand, within GFF766at 31.746 kb on - strand, within GFF766at 31.746 kb on - strand, within GFF766at 31.746 kb on - strand, within GFF766at 31.875 kb on - strand, within GFF766at 31.875 kb on - strand, within GFF766at 32.031 kb on - strand, within GFF766at 32.198 kb on + strand, within GFF766at 32.198 kb on + strand, within GFF766at 32.198 kb on + strand, within GFF766at 32.198 kb on + strand, within GFF766at 32.198 kb on + strand, within GFF766at 32.198 kb on + strand, within GFF766at 32.722 kb on + strand, within GFF767at 32.722 kb on + strand, within GFF767at 32.722 kb on + strand, within GFF767at 32.723 kb on - strand, within GFF767at 32.728 kb on + strand, within GFF767at 32.728 kb on + strand, within GFF767at 32.728 kb on + strand, within GFF767at 32.729 kb on - strand, within GFF767at 32.729 kb on - strand, within GFF767at 32.729 kb on - strand, within GFF767at 33.077 kb on - strand, within GFF767at 33.077 kb on - strand, within GFF767at 33.184 kb on + strand, within GFF767at 33.184 kb on + strand, within GFF767at 33.185 kb on - strand, within GFF767at 33.424 kb on + strand, within GFF767at 33.424 kb on + strand, within GFF767at 33.425 kb on - strand, within GFF767at 33.425 kb on - strand, within GFF767at 33.425 kb on - strand, within GFF767at 33.502 kb on + strand, within GFF767at 33.502 kb on + strand, within GFF767at 33.502 kb on + strand, within GFF767at 33.503 kb on - strand, within GFF767at 33.503 kb on - strand, within GFF767at 33.503 kb on - strand, within GFF767at 33.503 kb on - strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.515 kb on - strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.764 kb on - strand, within GFF767at 33.764 kb on - strand, within GFF767at 33.764 kb on - strand, within GFF767at 33.764 kb on - strand, within GFF767at 33.769 kb on + strand, within GFF767at 33.770 kb on - strand, within GFF767at 33.770 kb on - strand, within GFF767at 33.770 kb on - strand, within GFF767at 33.809 kb on - strand, within GFF767at 33.809 kb on - strand, within GFF767at 33.809 kb on - strand, within GFF767at 33.809 kb on - strand, within GFF767at 33.860 kb on + strand, within GFF767at 33.860 kb on + strand, within GFF767at 33.860 kb on + strand, within GFF767at 33.860 kb on + strand, within GFF767at 33.861 kb on - strand, within GFF767at 33.861 kb on - strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.920 kb on - strand, within GFF767at 33.920 kb on - strand, within GFF767at 33.961 kb on + strand, within GFF767at 33.970 kb on + strand, within GFF767at 33.970 kb on + strand, within GFF767at 33.983 kb on - strand, within GFF767at 34.027 kb on + strand, within GFF767at 34.027 kb on + strand, within GFF767at 34.045 kb on + strand, within GFF767at 34.045 kb on + strand, within GFF767at 34.046 kb on - strand, within GFF767at 34.192 kb on + strand, within GFF767at 34.378 kb on + strandat 34.378 kb on + strandat 34.378 kb on + strandat 34.378 kb on + strandat 34.460 kb on - strandat 34.460 kb on - strandat 34.572 kb on + strandat 34.573 kb on - strandat 34.740 kb on + strandat 34.761 kb on + strandat 34.917 kb on + strand, within GFF768at 34.917 kb on + strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 35.016 kb on + strand, within GFF768at 35.017 kb on - strand, within GFF768at 35.017 kb on - strand, within GFF768at 35.019 kb on + strand, within GFF768at 35.019 kb on + strand, within GFF768at 35.020 kb on - strand, within GFF768at 35.020 kb on - strand, within GFF768at 35.020 kb on - strand, within GFF768at 35.144 kb on + strand, within GFF768at 35.152 kb on - strand, within GFF768at 35.241 kb on + strand, within GFF768at 35.241 kb on + strand, within GFF768at 35.242 kb on - strand, within GFF768at 35.242 kb on - strand, within GFF768at 35.242 kb on - strand, within GFF768at 35.299 kb on - strand, within GFF768at 35.358 kb on + strand, within GFF768at 35.358 kb on + strand, within GFF768at 35.358 kb on + strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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31,442 + GFF766 0.50 -0.0
31,442 + GFF766 0.50 -0.3
31,443 - GFF766 0.50 -0.6
31,443 - GFF766 0.50 -0.0
31,443 - GFF766 0.50 -0.6
31,547 + GFF766 0.55 +1.0
31,682 + GFF766 0.62 -0.1
31,683 - GFF766 0.62 +0.1
31,683 - GFF766 0.62 -0.9
31,683 - GFF766 0.62 +0.2
31,683 - GFF766 0.62 -1.8
31,712 + GFF766 0.64 -0.7
31,712 + GFF766 0.64 -0.1
31,712 + GFF766 0.64 -0.2
31,712 + GFF766 0.64 -0.9
31,713 - GFF766 0.64 -0.2
31,713 - GFF766 0.64 -0.4
31,713 - GFF766 0.64 +0.0
31,745 + GFF766 0.65 +0.3
31,745 + GFF766 0.65 -1.3
31,745 + GFF766 0.65 -0.9
31,745 + GFF766 0.65 -0.4
31,745 + GFF766 0.65 -0.4
31,746 - GFF766 0.66 +0.1
31,746 - GFF766 0.66 +1.0
31,746 - GFF766 0.66 +0.5
31,875 - GFF766 0.72 +0.1
31,875 - GFF766 0.72 -0.1
32,031 - GFF766 0.80 +0.8
32,198 + GFF766 0.89 -0.2
32,198 + GFF766 0.89 +0.1
32,198 + GFF766 0.89 -0.2
32,198 + GFF766 0.89 -0.6
32,198 + GFF766 0.89 +0.1
32,198 + GFF766 0.89 -0.3
32,722 + GFF767 0.16 -0.0
32,722 + GFF767 0.16 +1.2
32,722 + GFF767 0.16 -0.0
32,723 - GFF767 0.16 -0.6
32,728 + GFF767 0.16 -0.0
32,728 + GFF767 0.16 -0.4
32,728 + GFF767 0.16 -0.2
32,729 - GFF767 0.16 -0.6
32,729 - GFF767 0.16 -0.7
32,729 - GFF767 0.16 -0.5
33,077 - GFF767 0.33 -0.3
33,077 - GFF767 0.33 -0.5
33,184 + GFF767 0.38 -0.6
33,184 + GFF767 0.38 +0.0
33,185 - GFF767 0.38 -1.7
33,424 + GFF767 0.49 +0.1
33,424 + GFF767 0.49 +0.3
33,425 - GFF767 0.49 -0.9
33,425 - GFF767 0.49 -0.9
33,425 - GFF767 0.49 +1.0
33,502 + GFF767 0.53 -0.5
33,502 + GFF767 0.53 -1.3
33,502 + GFF767 0.53 -0.6
33,503 - GFF767 0.53 -0.2
33,503 - GFF767 0.53 +0.2
33,503 - GFF767 0.53 +0.7
33,503 - GFF767 0.53 +0.1
33,514 + GFF767 0.54 -1.6
33,514 + GFF767 0.54 -0.8
33,514 + GFF767 0.54 -1.0
33,514 + GFF767 0.54 +0.5
33,514 + GFF767 0.54 -0.9
33,515 - GFF767 0.54 -0.7
33,763 + GFF767 0.66 -0.2
33,763 + GFF767 0.66 -0.5
33,763 + GFF767 0.66 -1.7
33,763 + GFF767 0.66 -0.7
33,763 + GFF767 0.66 -1.0
33,763 + GFF767 0.66 -0.8
33,764 - GFF767 0.66 -0.5
33,764 - GFF767 0.66 -0.8
33,764 - GFF767 0.66 -0.1
33,764 - GFF767 0.66 -0.0
33,769 + GFF767 0.66 -0.8
33,770 - GFF767 0.66 -0.7
33,770 - GFF767 0.66 -0.5
33,770 - GFF767 0.66 -0.5
33,809 - GFF767 0.68 +2.0
33,809 - GFF767 0.68 -1.1
33,809 - GFF767 0.68 -0.3
33,809 - GFF767 0.68 -0.8
33,860 + GFF767 0.70 -0.3
33,860 + GFF767 0.70 -1.0
33,860 + GFF767 0.70 -2.0
33,860 + GFF767 0.70 -1.5
33,861 - GFF767 0.71 -2.5
33,861 - GFF767 0.71 -0.3
33,919 + GFF767 0.73 -1.3
33,919 + GFF767 0.73 -0.7
33,919 + GFF767 0.73 +1.1
33,919 + GFF767 0.73 -1.0
33,919 + GFF767 0.73 -2.0
33,920 - GFF767 0.73 -0.4
33,920 - GFF767 0.73 -1.3
33,961 + GFF767 0.75 -2.4
33,970 + GFF767 0.76 -0.3
33,970 + GFF767 0.76 +0.1
33,983 - GFF767 0.76 -0.0
34,027 + GFF767 0.79 -2.1
34,027 + GFF767 0.79 -1.6
34,045 + GFF767 0.79 -1.2
34,045 + GFF767 0.79 -0.6
34,046 - GFF767 0.79 -0.5
34,192 + GFF767 0.87 -0.8
34,378 + +0.4
34,378 + -0.2
34,378 + -0.3
34,378 + -0.9
34,460 - -0.9
34,460 - -0.0
34,572 + +0.2
34,573 - -0.1
34,740 + -0.8
34,761 + -0.6
34,917 + GFF768 0.13 +0.5
34,917 + GFF768 0.13 -1.0
34,918 - GFF768 0.13 +0.2
34,918 - GFF768 0.13 -0.0
34,918 - GFF768 0.13 -0.5
34,918 - GFF768 0.13 -0.1
34,918 - GFF768 0.13 -0.7
34,918 - GFF768 0.13 -0.9
35,016 + GFF768 0.16 -0.1
35,017 - GFF768 0.16 -0.9
35,017 - GFF768 0.16 -1.8
35,019 + GFF768 0.16 +0.2
35,019 + GFF768 0.16 -0.9
35,020 - GFF768 0.16 +0.3
35,020 - GFF768 0.16 +1.1
35,020 - GFF768 0.16 -0.4
35,144 + GFF768 0.20 +0.8
35,152 - GFF768 0.20 +0.1
35,241 + GFF768 0.23 -0.5
35,241 + GFF768 0.23 -1.3
35,242 - GFF768 0.23 +0.1
35,242 - GFF768 0.23 -2.3
35,242 - GFF768 0.23 -0.7
35,299 - GFF768 0.24 -0.1
35,358 + GFF768 0.26 +1.5
35,358 + GFF768 0.26 +0.1
35,358 + GFF768 0.26 +0.1
35,359 - GFF768 0.26 +0.8
35,359 - GFF768 0.26 -1.5
35,359 - GFF768 0.26 -1.6
35,359 - GFF768 0.26 -0.3
35,359 - GFF768 0.26 -0.3
35,359 - GFF768 0.26 -0.7
35,359 - GFF768 0.26 +0.8
35,359 - GFF768 0.26 -0.6
35,359 - GFF768 0.26 -0.5
35,359 - GFF768 0.26 -0.5

Or see this region's nucleotide sequence