Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7200 and GFF7201 overlap by 4 nucleotides GFF7201 and GFF7202 are separated by 17 nucleotides GFF7202 and GFF7203 are separated by 7 nucleotides
GFF7200 - Alkanesulfonates transport system permease protein, at 18,592 to 19,440
GFF7200
GFF7201 - Alkanesulfonates transport system permease protein, at 19,437 to 20,252
GFF7201
GFF7202 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 20,270 to 21,142
GFF7202
GFF7203 - Two-component transcriptional response regulator, LuxR family, at 21,150 to 22,622
GFF7203
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1 at 19.291 kb on + strand, within GFF7200 at 19.292 kb on - strand, within GFF7200 at 20.032 kb on - strand, within GFF7201 at 20.046 kb on + strand, within GFF7201 at 20.047 kb on - strand, within GFF7201 at 20.333 kb on + strand at 20.333 kb on + strand at 20.333 kb on + strand at 20.333 kb on + strand at 20.334 kb on - strand at 20.334 kb on - strand at 20.484 kb on - strand, within GFF7202 at 20.622 kb on - strand, within GFF7202 at 20.622 kb on - strand, within GFF7202 at 21.152 kb on - strand at 21.387 kb on + strand, within GFF7203 at 21.387 kb on + strand, within GFF7203 at 21.387 kb on + strand, within GFF7203 at 21.388 kb on - strand, within GFF7203 at 21.676 kb on + strand, within GFF7203 at 21.676 kb on + strand, within GFF7203 at 21.787 kb on + strand, within GFF7203 at 21.787 kb on + strand, within GFF7203 at 21.788 kb on - strand, within GFF7203 at 21.788 kb on - strand, within GFF7203 at 22.043 kb on - strand, within GFF7203 at 22.093 kb on + strand, within GFF7203
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 19,291 + GFF7200 0.82 -0.5 19,292 - GFF7200 0.82 +0.3 20,032 - GFF7201 0.73 -0.3 20,046 + GFF7201 0.75 -0.2 20,047 - GFF7201 0.75 +0.9 20,333 + +0.3 20,333 + -1.1 20,333 + -0.2 20,333 + +1.0 20,334 - +0.0 20,334 - +0.2 20,484 - GFF7202 0.25 +0.9 20,622 - GFF7202 0.40 +0.5 20,622 - GFF7202 0.40 +0.6 21,152 - -1.1 21,387 + GFF7203 0.16 +0.3 21,387 + GFF7203 0.16 +0.5 21,387 + GFF7203 0.16 +1.2 21,388 - GFF7203 0.16 -0.8 21,676 + GFF7203 0.36 -0.3 21,676 + GFF7203 0.36 -0.7 21,787 + GFF7203 0.43 +0.4 21,787 + GFF7203 0.43 +1.3 21,788 - GFF7203 0.43 -0.6 21,788 - GFF7203 0.43 -1.1 22,043 - GFF7203 0.61 -0.1 22,093 + GFF7203 0.64 +0.3
Or see this region's nucleotide sequence