Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7151 and GFF7152 are separated by 146 nucleotides GFF7152 and GFF7153 overlap by 4 nucleotides GFF7153 and GFF7154 are separated by 35 nucleotides GFF7154 and GFF7155 overlap by 4 nucleotides GFF7155 and GFF7156 are separated by 123 nucleotides
GFF7151 - 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22), at 16,895 to 17,809
GFF7151
GFF7152 - no description, at 17,956 to 18,621
GFF7152
GFF7153 - no description, at 18,618 to 18,746
GFF7153
GFF7154 - Toxin HigB / Protein kinase domain of HipA, at 18,782 to 20,107
GFF7154
GFF7155 - hypothetical protein, at 20,104 to 20,565
GFF7155
GFF7156 - hypothetical protein, at 20,689 to 21,693
GFF7156
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.853 kb on + strand at 17.860 kb on - strand at 17.869 kb on - strand at 17.869 kb on - strand at 17.870 kb on + strand at 17.870 kb on + strand at 17.881 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 18.057 kb on + strand, within GFF7152 at 18.060 kb on - strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.081 kb on - strand, within GFF7152 at 18.081 kb on - strand, within GFF7152 at 18.783 kb on + strand at 18.783 kb on + strand at 18.783 kb on + strand at 18.784 kb on - strand at 18.784 kb on - strand at 18.784 kb on - strand at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.092 kb on + strand, within GFF7154 at 19.092 kb on + strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.118 kb on + strand, within GFF7154 at 19.119 kb on - strand, within GFF7154 at 19.119 kb on - strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.135 kb on - strand, within GFF7154 at 19.135 kb on - strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.657 kb on + strand, within GFF7154 at 19.657 kb on + strand, within GFF7154 at 19.657 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.927 kb on - strand, within GFF7154 at 19.927 kb on - strand, within GFF7154 at 20.025 kb on + strand at 20.026 kb on - strand at 20.026 kb on - strand at 20.026 kb on - strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.924 kb on + strand, within GFF7156 at 20.924 kb on + strand, within GFF7156 at 20.924 kb on + strand, within GFF7156 at 20.924 kb on + strand, within GFF7156 at 20.924 kb on + strand, within GFF7156 at 20.925 kb on - strand, within GFF7156 at 20.925 kb on - strand, within GFF7156 at 20.925 kb on - strand, within GFF7156
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 17,853 + +0.1 17,860 - -0.0 17,869 - -0.3 17,869 - -0.3 17,870 + +1.2 17,870 + +0.0 17,881 + +0.1 17,957 + -0.6 17,957 + -0.3 17,957 + -0.0 17,957 + +0.0 17,957 + +0.4 17,957 + -1.3 17,957 + -0.5 17,957 + +0.2 17,957 + +0.8 17,958 - +0.2 17,958 - +0.2 17,958 - -0.1 17,958 - -0.6 17,958 - -0.6 17,958 - +0.2 17,958 - -0.0 17,958 - -0.4 17,958 - +0.3 17,958 - +0.1 18,057 + GFF7152 0.15 -0.4 18,060 - GFF7152 0.16 +0.6 18,080 + GFF7152 0.19 +0.6 18,080 + GFF7152 0.19 +0.4 18,080 + GFF7152 0.19 +1.0 18,080 + GFF7152 0.19 -0.3 18,080 + GFF7152 0.19 +0.3 18,080 + GFF7152 0.19 -0.4 18,080 + GFF7152 0.19 +1.0 18,081 - GFF7152 0.19 -0.6 18,081 - GFF7152 0.19 -0.6 18,783 + -0.5 18,783 + -0.7 18,783 + +1.0 18,784 - -0.5 18,784 - -0.2 18,784 - +1.6 19,014 + GFF7154 0.17 -1.6 19,014 + GFF7154 0.17 -0.4 19,014 + GFF7154 0.17 -1.4 19,014 + GFF7154 0.17 -0.4 19,014 + GFF7154 0.17 +0.7 19,014 + GFF7154 0.17 -1.8 19,014 + GFF7154 0.17 -0.0 19,014 + GFF7154 0.17 +0.3 19,014 + GFF7154 0.17 -0.5 19,014 + GFF7154 0.17 -1.9 19,014 + GFF7154 0.17 -0.8 19,014 + GFF7154 0.17 -0.6 19,015 - GFF7154 0.18 -0.0 19,015 - GFF7154 0.18 -0.3 19,015 - GFF7154 0.18 -0.7 19,015 - GFF7154 0.18 +0.6 19,015 - GFF7154 0.18 -1.5 19,015 - GFF7154 0.18 -0.3 19,015 - GFF7154 0.18 -1.3 19,015 - GFF7154 0.18 -0.8 19,015 - GFF7154 0.18 -0.5 19,015 - GFF7154 0.18 -1.3 19,015 - GFF7154 0.18 +0.0 19,015 - GFF7154 0.18 -1.3 19,015 - GFF7154 0.18 +0.3 19,015 - GFF7154 0.18 -0.6 19,015 - GFF7154 0.18 -1.5 19,015 - GFF7154 0.18 -0.5 19,015 - GFF7154 0.18 +1.0 19,092 + GFF7154 0.23 +0.0 19,092 + GFF7154 0.23 -0.4 19,093 - GFF7154 0.23 -0.6 19,093 - GFF7154 0.23 -0.3 19,093 - GFF7154 0.23 -0.2 19,116 + GFF7154 0.25 +0.7 19,116 + GFF7154 0.25 -0.5 19,116 + GFF7154 0.25 -0.8 19,116 + GFF7154 0.25 -0.4 19,116 + GFF7154 0.25 -0.7 19,116 + GFF7154 0.25 +0.2 19,117 - GFF7154 0.25 +0.8 19,117 - GFF7154 0.25 -0.3 19,117 - GFF7154 0.25 -0.7 19,117 - GFF7154 0.25 -0.7 19,117 - GFF7154 0.25 -0.0 19,117 - GFF7154 0.25 -0.3 19,117 - GFF7154 0.25 -0.3 19,117 - GFF7154 0.25 -0.8 19,117 - GFF7154 0.25 -0.5 19,117 - GFF7154 0.25 -0.3 19,118 + GFF7154 0.25 -0.9 19,119 - GFF7154 0.25 -1.2 19,119 - GFF7154 0.25 -0.2 19,134 + GFF7154 0.27 -0.1 19,134 + GFF7154 0.27 -0.0 19,134 + GFF7154 0.27 -0.8 19,134 + GFF7154 0.27 +2.0 19,134 + GFF7154 0.27 +0.6 19,134 + GFF7154 0.27 +0.7 19,134 + GFF7154 0.27 -0.1 19,134 + GFF7154 0.27 -0.7 19,134 + GFF7154 0.27 -1.0 19,134 + GFF7154 0.27 -0.1 19,134 + GFF7154 0.27 -0.3 19,135 - GFF7154 0.27 -0.0 19,135 - GFF7154 0.27 -0.2 19,305 + GFF7154 0.39 -2.4 19,305 + GFF7154 0.39 -0.4 19,305 + GFF7154 0.39 -0.8 19,305 + GFF7154 0.39 +0.1 19,305 + GFF7154 0.39 +0.5 19,305 + GFF7154 0.39 -0.4 19,305 + GFF7154 0.39 -0.0 19,305 + GFF7154 0.39 -0.2 19,305 + GFF7154 0.39 -0.0 19,306 - GFF7154 0.40 +0.5 19,306 - GFF7154 0.40 +0.8 19,306 - GFF7154 0.40 -0.6 19,306 - GFF7154 0.40 -0.0 19,306 - GFF7154 0.40 -1.1 19,306 - GFF7154 0.40 -0.1 19,657 + GFF7154 0.66 +0.2 19,657 + GFF7154 0.66 +1.3 19,657 + GFF7154 0.66 -0.0 19,926 + GFF7154 0.86 -0.8 19,926 + GFF7154 0.86 -0.5 19,926 + GFF7154 0.86 -0.3 19,926 + GFF7154 0.86 +0.2 19,926 + GFF7154 0.86 -1.4 19,926 + GFF7154 0.86 -1.5 19,927 - GFF7154 0.86 -1.5 19,927 - GFF7154 0.86 -0.7 20,025 + +0.0 20,026 - -0.4 20,026 - +2.4 20,026 - -0.4 20,066 + -0.6 20,066 + -0.7 20,066 + -0.4 20,066 + -0.8 20,067 - +1.0 20,067 - -0.1 20,067 - +0.1 20,924 + GFF7156 0.23 -0.0 20,924 + GFF7156 0.23 -0.4 20,924 + GFF7156 0.23 -0.2 20,924 + GFF7156 0.23 -1.2 20,924 + GFF7156 0.23 +0.2 20,925 - GFF7156 0.23 -0.5 20,925 - GFF7156 0.23 -0.8 20,925 - GFF7156 0.23 -0.4
Or see this region's nucleotide sequence