Strain Fitness in Variovorax sp. SCN45 around GFF66

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
81,477	+				-0.7
81,477	+				+0.4
81,477	+				-1.8
81,477	+				-0.4
81,477	+				-0.1
81,477	+				+0.2
81,477	+				-0.6
81,477	+				+1.0
81,478	-				-0.1
81,478	-				-0.7
81,478	-				-0.2
81,478	-				-0.5
81,478	-				-0.6
81,481	+				-0.8
81,482	-				-0.4
81,482	-				-0.3
81,506	+				-0.1
81,630	+		GFF65	0.14	+0.0
81,652	-		GFF65	0.16	-1.0
81,652	-		GFF65	0.16	-0.4
81,652	-		GFF65	0.16	-0.6
81,706	-		GFF65	0.22	-1.0
81,706	-		GFF65	0.22	-0.4
81,723	+		GFF65	0.24	+0.3
81,723	+		GFF65	0.24	+1.0
81,724	-		GFF65	0.24	+0.4
81,724	-		GFF65	0.24	-0.2
81,724	-		GFF65	0.24	-0.1
81,724	-		GFF65	0.24	-0.2
81,843	+		GFF65	0.37	-0.3
81,843	+		GFF65	0.37	-1.5
81,844	-		GFF65	0.37	+2.6
81,844	-		GFF65	0.37	+0.8
81,844	-		GFF65	0.37	+0.0
81,844	-		GFF65	0.37	-1.0
81,844	-		GFF65	0.37	-0.3
81,948	+		GFF65	0.48	-0.6
81,948	+		GFF65	0.48	-0.2
81,948	+		GFF65	0.48	-0.1
81,948	+		GFF65	0.48	+0.1
81,948	+		GFF65	0.48	+0.4
81,949	-		GFF65	0.48	-1.9
81,949	-		GFF65	0.48	-0.3
81,949	-		GFF65	0.48	-0.0
82,044	+		GFF65	0.58	-0.8
82,045	-		GFF65	0.58	+0.7
82,323	+		GFF65	0.88	-2.9
82,323	+		GFF65	0.88	+1.4
82,324	-		GFF65	0.88	-0.7
82,431	+				+0.1
82,540	+				+0.9
82,541	-				+1.1
82,541	-				+0.6
82,544	+				-0.6
82,544	+				-1.3
82,544	+				+0.1
82,544	+				+0.9
82,544	+				-0.1
82,544	+				+0.0
82,544	+				-1.3
82,544	+				-0.6
82,545	-				-1.0
82,545	-				-1.9
82,545	-				-0.8
82,545	-				-0.6
82,545	-				+0.2
82,545	-				+0.2
82,545	-				-0.3
82,545	-				-0.1
82,545	-				+0.2
82,546	+				-3.0
82,876	+		GFF66	0.33	-0.9
83,122	+		GFF66	0.53	+0.3
83,122	+		GFF66	0.53	-0.5
83,191	+		GFF66	0.59	+0.2
83,467	+		GFF66	0.81	-0.5
83,467	+		GFF66	0.81	-0.6
83,467	+		GFF66	0.81	-1.1
83,467	+		GFF66	0.81	-0.4
83,468	-		GFF66	0.81	-1.8
83,468	-		GFF66	0.81	-0.0
83,468	-		GFF66	0.81	-0.5
83,468	-		GFF66	0.81	-0.4
83,564	-		GFF66	0.88	-0.6
83,602	+				-0.3
83,602	+				-0.6
83,602	+				-1.5
83,603	-				-0.2
83,721	+				-0.9
83,721	+				-0.7
83,721	+				-0.5
83,722	-				-0.8
83,763	+				-0.8
83,764	-				-0.7
83,854	-		GFF67	0.12	-0.8
83,877	+		GFF67	0.14	-0.1
83,878	-		GFF67	0.14	-0.5
84,126	+		GFF67	0.34	-0.1
84,126	+		GFF67	0.34	-0.5
84,127	-		GFF67	0.34	+0.7
84,408	+		GFF67	0.57	-1.4
84,408	+		GFF67	0.57	-0.3
84,409	-		GFF67	0.57	+0.7
84,409	-		GFF67	0.57	-0.0