Strain Fitness in Variovorax sp. SCN45 around GFF6571

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
10,972	+				+0.3
10,972	+				-0.3
10,972	+				-0.2
10,972	+				+0.4
10,972	+				+0.5
10,973	-				-0.2
10,973	-				-0.7
10,973	-				-0.4
10,973	-				+0.1
10,978	+				-0.3
10,979	-				+0.3
10,996	+				+1.4
11,015	+				-0.1
11,062	+				+0.1
11,062	+				+0.7
11,062	+				-0.6
11,062	+				-0.5
11,062	+				-0.1
11,062	+				-0.1
11,062	+				+0.5
11,062	+				+0.4
11,062	+				+0.2
11,063	-				+0.1
11,063	-				+0.5
11,063	-				-1.0
11,063	-				-0.8
11,063	-				-0.3
11,063	-				-1.0
11,063	-				-1.0
11,063	-				+1.0
11,063	-				-0.4
11,063	-				+0.3
11,063	-				+1.6
11,063	-				-1.2
11,063	-				-0.4
11,063	-				+0.3
11,063	-				-0.1
11,063	-				+0.3
11,063	-				-0.6
11,063	-				-0.6
11,063	-				-1.0
11,063	-				+1.3
11,135	+		GFF6569	0.19	-0.9
11,135	+		GFF6569	0.19	+0.0
11,135	+		GFF6569	0.19	-1.0
11,135	+		GFF6569	0.19	-0.7
11,135	+		GFF6569	0.19	-0.6
11,135	+		GFF6569	0.19	+0.1
11,135	+		GFF6569	0.19	-1.2
11,136	-		GFF6569	0.20	-1.2
11,136	-		GFF6569	0.20	-0.9
11,136	-		GFF6569	0.20	-0.4
11,136	-		GFF6569	0.20	-0.0
11,136	-		GFF6569	0.20	+1.6
11,136	-		GFF6569	0.20	-0.4
11,198	+		GFF6569	0.31	-0.5
11,198	+		GFF6569	0.31	+0.0
11,198	+		GFF6569	0.31	-1.1
11,198	+		GFF6569	0.31	-1.0
11,198	+		GFF6569	0.31	-0.4
11,198	+		GFF6569	0.31	+0.4
11,198	+		GFF6569	0.31	-0.2
11,199	-		GFF6569	0.31	-1.1
11,199	-		GFF6569	0.31	-0.1
11,199	-		GFF6569	0.31	-1.0
11,199	-		GFF6569	0.31	+1.1
11,207	+		GFF6569	0.33	+0.5
11,207	+		GFF6569	0.33	-0.6
11,207	+		GFF6569	0.33	-0.4
11,207	+		GFF6569	0.33	+0.0
11,207	+		GFF6569	0.33	-0.8
11,207	+		GFF6569	0.33	-0.2
11,207	+		GFF6569	0.33	+0.0
11,207	+		GFF6569	0.33	-0.4
11,207	+		GFF6569	0.33	-0.1
11,207	+		GFF6569	0.33	+1.0
11,207	+		GFF6569	0.33	+0.2
11,207	+		GFF6569	0.33	+0.0
11,207	+		GFF6569	0.33	-1.3
11,207	+		GFF6569	0.33	-0.7
11,207	+		GFF6569	0.33	-0.7
11,207	+		GFF6569	0.33	-1.2
11,207	+		GFF6569	0.33	-0.9
11,208	-		GFF6569	0.33	-1.1
11,208	-		GFF6569	0.33	-0.6
11,208	-		GFF6569	0.33	-1.5
11,208	-		GFF6569	0.33	-0.4
11,208	-		GFF6569	0.33	+1.4
11,208	-		GFF6569	0.33	-0.3
11,208	-		GFF6569	0.33	+0.5
11,208	-		GFF6569	0.33	+0.1
11,208	-		GFF6569	0.33	-0.3
11,208	-		GFF6569	0.33	+0.1
11,208	-		GFF6569	0.33	-0.1
11,208	-		GFF6569	0.33	-0.2
11,208	-		GFF6569	0.33	+0.2
11,208	-		GFF6569	0.33	-0.3
11,208	-		GFF6569	0.33	-0.1
11,208	-		GFF6569	0.33	-0.4
11,208	-		GFF6569	0.33	-0.9
11,208	-		GFF6569	0.33	-0.1
11,375	+		GFF6569	0.63	+0.9
11,375	+		GFF6569	0.63	-1.1
11,376	-		GFF6569	0.64	+0.4
11,376	-		GFF6569	0.64	-0.4
11,424	+		GFF6569	0.72	+0.2
11,424	+		GFF6569	0.72	-0.6
11,506	+		GFF6569	0.87	+0.3
11,506	+		GFF6569	0.87	-0.2
11,506	+		GFF6569	0.87	+0.1
11,506	+		GFF6569	0.87	-0.0
11,507	-		GFF6569	0.88	-1.2
11,507	-		GFF6569	0.88	+0.3
11,507	-		GFF6569	0.88	-0.5
11,507	-		GFF6569	0.88	-0.4
11,507	-		GFF6569	0.88	-0.7
11,534	+				-0.2
11,534	+				+0.1
11,534	+				-0.5
11,534	+				-0.6
11,534	+				-0.8
11,534	+				-2.9
11,534	+				-1.0
11,534	+				-0.3
11,534	+				+0.9
11,534	+				+0.0
11,535	-				+0.3
11,535	-				-0.3
11,535	-				-1.0
11,535	-				+0.3
11,535	-				-0.2
11,535	-				-0.0
11,535	-				-0.3
11,535	-				+0.4
11,535	-				-0.5
11,535	-				-0.1
11,535	-				-1.2
11,629	+				-1.0
11,629	+				+0.6
11,629	+				+0.5
11,630	-				+0.3
11,630	-				-0.4
11,630	-				+0.6
11,828	+		GFF6570	0.54	-2.5
11,828	+		GFF6570	0.54	+0.0
11,852	+		GFF6570	0.63	+0.0
11,852	+		GFF6570	0.63	-0.8
11,960	+				+1.0
11,990	-				+0.3
11,990	-				-0.7
12,268	+		GFF6571	0.25	-0.3
12,385	+		GFF6571	0.34	-0.1
12,386	-		GFF6571	0.34	+0.1
12,386	-		GFF6571	0.34	+0.0
12,445	+		GFF6571	0.39	-0.3
12,445	+		GFF6571	0.39	+0.2
12,445	+		GFF6571	0.39	-0.6
12,590	+		GFF6571	0.50	+0.2
12,591	-		GFF6571	0.50	-0.8
12,856	+		GFF6571	0.71	-0.1
12,856	+		GFF6571	0.71	-0.3
12,856	+		GFF6571	0.71	+1.6
12,856	+		GFF6571	0.71	-1.3
12,856	+		GFF6571	0.71	+0.6
12,857	-		GFF6571	0.71	-0.4
12,857	-		GFF6571	0.71	-0.0
12,857	-		GFF6571	0.71	+0.0
12,956	-		GFF6571	0.79	-0.1
13,009	+		GFF6571	0.83	-0.2
13,009	+		GFF6571	0.83	-1.6
13,009	+		GFF6571	0.83	+0.6
13,009	+		GFF6571	0.83	+1.1
13,009	+		GFF6571	0.83	-0.4
13,010	-		GFF6571	0.83	+0.2
13,010	-		GFF6571	0.83	-1.5
13,010	-		GFF6571	0.83	-1.4
13,329	+		GFF6572	0.11	+0.0
13,330	-		GFF6572	0.11	+0.8
13,330	-		GFF6572	0.11	-0.8
13,347	+		GFF6572	0.13	-0.3
13,348	-		GFF6572	0.13	-0.6
13,348	-		GFF6572	0.13	+0.2
13,434	+		GFF6572	0.21	+1.6
13,434	+		GFF6572	0.21	-0.7
13,434	+		GFF6572	0.21	+0.3
13,435	-		GFF6572	0.21	-0.4
13,435	-		GFF6572	0.21	-0.4
13,435	-		GFF6572	0.21	+0.1
13,659	+		GFF6572	0.44	-0.5
13,659	+		GFF6572	0.44	-0.2
13,660	-		GFF6572	0.44	+0.5
13,762	+		GFF6572	0.54	-0.4
13,762	+		GFF6572	0.54	-0.2
13,762	+		GFF6572	0.54	-0.1
13,860	+		GFF6572	0.63	+0.0
13,860	+		GFF6572	0.63	-0.2
13,860	+		GFF6572	0.63	+0.3
13,861	-		GFF6572	0.64	+0.0
13,861	-		GFF6572	0.64	+0.6
13,861	-		GFF6572	0.64	-0.6
13,869	+		GFF6572	0.64	-0.1
13,870	-		GFF6572	0.64	-0.5
13,914	+		GFF6572	0.69	+0.3
13,914	+		GFF6572	0.69	-0.5
13,914	+		GFF6572	0.69	-1.5
13,915	-		GFF6572	0.69	-0.3
13,915	-		GFF6572	0.69	+0.2
13,915	-		GFF6572	0.69	-0.6
14,209	+				+0.2
14,210	-				-0.4
14,210	-				+0.6
14,210	-				+0.0