Strain Fitness in Variovorax sp. SCN45 around GFF6532

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6531 and GFF6532 are separated by 4 nucleotidesGFF6532 and GFF6533 are separated by 111 nucleotides GFF6531 - 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12)(EC 2.4.99.13), at 26,304 to 27,689 GFF6531 GFF6532 - Phosphoglucomutase (EC 5.4.2.2) @ Phosphomannomutase (EC 5.4.2.8), at 27,694 to 29,076 GFF6532 GFF6533 - Methylphosphotriester-DNA--protein-cysteine S-methyltransferase (EC 2.1.1.n11) / DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 29,188 to 30,774 GFF6533 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.065 kb on - strand, within GFF6532at 28.065 kb on - strand, within GFF6532at 28.185 kb on - strand, within GFF6532at 28.185 kb on - strand, within GFF6532at 28.185 kb on - strand, within GFF6532at 28.185 kb on - strand, within GFF6532at 28.185 kb on - strand, within GFF6532at 28.185 kb on - strand, within GFF6532at 28.185 kb on - strand, within GFF6532at 28.185 kb on - strand, within GFF6532at 28.185 kb on - strand, within GFF6532at 28.620 kb on - strand, within GFF6532at 28.620 kb on - strand, within GFF6532at 28.620 kb on - strand, within GFF6532at 28.620 kb on - strand, within GFF6532at 28.719 kb on - strand, within GFF6532at 28.719 kb on - strand, within GFF6532at 28.719 kb on - strand, within GFF6532at 28.758 kb on - strand, within GFF6532at 28.758 kb on - strand, within GFF6532at 28.758 kb on - strand, within GFF6532at 28.758 kb on - strand, within GFF6532at 28.824 kb on - strand, within GFF6532at 28.824 kb on - strand, within GFF6532at 28.824 kb on - strand, within GFF6532at 29.046 kb on - strandat 29.046 kb on - strandat 29.046 kb on - strandat 29.046 kb on - strandat 29.103 kb on - strandat 29.116 kb on + strandat 29.116 kb on + strandat 29.116 kb on + strandat 29.116 kb on + strandat 29.117 kb on - strandat 29.117 kb on - strandat 29.117 kb on - strandat 29.117 kb on - strandat 29.176 kb on + strandat 29.193 kb on + strandat 29.193 kb on + strandat 29.193 kb on + strandat 29.194 kb on - strandat 29.236 kb on + strandat 29.236 kb on + strandat 29.236 kb on + strandat 29.236 kb on + strandat 29.236 kb on + strandat 29.236 kb on + strandat 29.237 kb on - strandat 29.237 kb on - strandat 29.237 kb on - strandat 29.237 kb on - strandat 29.308 kb on + strandat 29.308 kb on + strandat 29.308 kb on + strandat 29.308 kb on + strandat 29.308 kb on + strandat 29.308 kb on + strandat 29.308 kb on + strandat 29.308 kb on + strandat 29.308 kb on + strandat 29.309 kb on - strandat 29.309 kb on - strandat 29.309 kb on - strandat 29.309 kb on - strandat 29.309 kb on - strandat 29.309 kb on - strandat 29.309 kb on - strandat 29.309 kb on - strandat 29.309 kb on - strandat 29.623 kb on + strand, within GFF6533at 29.623 kb on + strand, within GFF6533at 29.623 kb on + strand, within GFF6533at 29.623 kb on + strand, within GFF6533at 29.623 kb on + strand, within GFF6533at 29.624 kb on - strand, within GFF6533at 29.624 kb on - strand, within GFF6533at 29.752 kb on + strand, within GFF6533at 29.753 kb on - strand, within GFF6533at 29.753 kb on - strand, within GFF6533at 29.850 kb on + strand, within GFF6533at 29.851 kb on + strand, within GFF6533at 29.851 kb on + strand, within GFF6533at 29.852 kb on - strand, within GFF6533at 29.852 kb on - strand, within GFF6533at 29.909 kb on + strand, within GFF6533at 29.909 kb on + strand, within GFF6533at 29.910 kb on - strand, within GFF6533at 29.959 kb on + strand, within GFF6533at 29.959 kb on + strand, within GFF6533at 29.959 kb on + strand, within GFF6533at 29.960 kb on - strand, within GFF6533at 29.960 kb on - strand, within GFF6533at 29.960 kb on - strand, within GFF6533

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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28,065 - GFF6532 0.27 -0.3
28,065 - GFF6532 0.27 -1.0
28,185 - GFF6532 0.36 +0.7
28,185 - GFF6532 0.36 -1.1
28,185 - GFF6532 0.36 +0.1
28,185 - GFF6532 0.36 +0.4
28,185 - GFF6532 0.36 +1.0
28,185 - GFF6532 0.36 -0.8
28,185 - GFF6532 0.36 +0.2
28,185 - GFF6532 0.36 -1.7
28,185 - GFF6532 0.36 -0.0
28,620 - GFF6532 0.67 +0.1
28,620 - GFF6532 0.67 -0.5
28,620 - GFF6532 0.67 -1.0
28,620 - GFF6532 0.67 -0.2
28,719 - GFF6532 0.74 -0.8
28,719 - GFF6532 0.74 -0.5
28,719 - GFF6532 0.74 +2.3
28,758 - GFF6532 0.77 -3.2
28,758 - GFF6532 0.77 -0.7
28,758 - GFF6532 0.77 +1.0
28,758 - GFF6532 0.77 +0.5
28,824 - GFF6532 0.82 +0.5
28,824 - GFF6532 0.82 -0.3
28,824 - GFF6532 0.82 -0.3
29,046 - -1.0
29,046 - -2.5
29,046 - -1.1
29,046 - -0.3
29,103 - -1.2
29,116 + +0.1
29,116 + -0.2
29,116 + -1.8
29,116 + -0.8
29,117 - -2.6
29,117 - -1.9
29,117 - +1.3
29,117 - -0.9
29,176 + +0.6
29,193 + +0.3
29,193 + +0.3
29,193 + +0.9
29,194 - -1.0
29,236 + -0.8
29,236 + +0.2
29,236 + +1.3
29,236 + -0.2
29,236 + +1.0
29,236 + -1.2
29,237 - -0.1
29,237 - -1.0
29,237 - +1.0
29,237 - -0.8
29,308 + -0.8
29,308 + +0.3
29,308 + -2.6
29,308 + -0.8
29,308 + -1.2
29,308 + +0.4
29,308 + +1.5
29,308 + -0.7
29,308 + -0.3
29,309 - +0.4
29,309 - +0.4
29,309 - +1.0
29,309 - -1.2
29,309 - -0.7
29,309 - -0.6
29,309 - -0.0
29,309 - -0.5
29,309 - -0.5
29,623 + GFF6533 0.27 -0.7
29,623 + GFF6533 0.27 +0.2
29,623 + GFF6533 0.27 -0.3
29,623 + GFF6533 0.27 +1.8
29,623 + GFF6533 0.27 +0.0
29,624 - GFF6533 0.27 +0.1
29,624 - GFF6533 0.27 +0.5
29,752 + GFF6533 0.36 -1.0
29,753 - GFF6533 0.36 -0.2
29,753 - GFF6533 0.36 +1.1
29,850 + GFF6533 0.42 +0.5
29,851 + GFF6533 0.42 +0.8
29,851 + GFF6533 0.42 +1.1
29,852 - GFF6533 0.42 -1.0
29,852 - GFF6533 0.42 +0.5
29,909 + GFF6533 0.45 -0.5
29,909 + GFF6533 0.45 +0.2
29,910 - GFF6533 0.45 +0.1
29,959 + GFF6533 0.49 -0.6
29,959 + GFF6533 0.49 -0.7
29,959 + GFF6533 0.49 -0.2
29,960 - GFF6533 0.49 -0.9
29,960 - GFF6533 0.49 -1.5
29,960 - GFF6533 0.49 -0.4

Or see this region's nucleotide sequence