Strain Fitness in Variovorax sp. SCN45 around GFF6511

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
5,983	+		GFF6510	0.55	-0.8
5,983	+		GFF6510	0.55	+1.4
5,983	+		GFF6510	0.55	+1.3
5,983	+		GFF6510	0.55	+0.5
5,983	+		GFF6510	0.55	-0.7
5,983	+		GFF6510	0.55	-0.3
5,983	+		GFF6510	0.55	+0.2
5,984	-		GFF6510	0.55	-0.0
5,984	-		GFF6510	0.55	-0.0
5,984	-		GFF6510	0.55	-0.5
5,984	-		GFF6510	0.55	+0.5
6,026	-		GFF6510	0.57	-1.0
6,026	-		GFF6510	0.57	-0.3
6,026	-		GFF6510	0.57	-0.5
6,094	+		GFF6510	0.60	-0.8
6,094	+		GFF6510	0.60	-0.2
6,095	-		GFF6510	0.60	+0.6
6,095	-		GFF6510	0.60	-0.9
6,160	+		GFF6510	0.63	+0.5
6,301	+		GFF6510	0.69	-0.3
6,427	+		GFF6510	0.75	-0.1
6,565	+		GFF6510	0.82	+0.4
6,676	+		GFF6510	0.87	-0.1
6,676	+		GFF6510	0.87	+0.2
6,676	+		GFF6510	0.87	+0.5
6,676	+		GFF6510	0.87	+0.6
6,676	+		GFF6510	0.87	+0.5
6,676	+		GFF6510	0.87	+0.2
6,676	+		GFF6510	0.87	+0.9
6,677	-		GFF6510	0.87	-0.2
6,677	-		GFF6510	0.87	-0.2
6,677	-		GFF6510	0.87	-1.5
6,677	-		GFF6510	0.87	+0.3
6,677	-		GFF6510	0.87	-0.2
6,677	-		GFF6510	0.87	+0.4
6,677	-		GFF6510	0.87	+0.0
6,677	-		GFF6510	0.87	-0.2
6,709	+		GFF6510	0.88	-0.3
6,710	-		GFF6510	0.88	+0.5
6,710	-		GFF6510	0.88	-0.7
6,710	-		GFF6510	0.88	-0.1
6,832	+				+1.5
6,832	+				-0.5
6,833	-				+0.5
6,919	+				+0.2
6,919	+				-0.5
6,919	+				-0.5
6,919	+				+0.3
6,920	-				-0.1
6,920	-				+1.4
6,920	-				-1.0
6,920	-				-0.5
6,920	-				-0.2
6,920	-				+0.4
6,965	-				-1.0
7,097	+		GFF6511	0.16	-0.8
7,097	+		GFF6511	0.16	+0.5
7,097	+		GFF6511	0.16	-2.2
7,098	-		GFF6511	0.16	+1.5
7,098	-		GFF6511	0.16	-0.2
7,098	-		GFF6511	0.16	+0.3
7,098	-		GFF6511	0.16	-0.7
7,205	+		GFF6511	0.31	-0.3
7,205	+		GFF6511	0.31	-1.5
7,205	+		GFF6511	0.31	-0.2
7,205	+		GFF6511	0.31	+0.1
7,205	+		GFF6511	0.31	-0.1
7,206	-		GFF6511	0.31	-1.3
7,206	-		GFF6511	0.31	-0.8
7,206	-		GFF6511	0.31	-0.8
7,226	+		GFF6511	0.33	-0.7
7,226	+		GFF6511	0.33	-0.1
7,226	+		GFF6511	0.33	+0.1
7,226	+		GFF6511	0.33	+0.5
7,227	-		GFF6511	0.34	-2.7
7,227	-		GFF6511	0.34	-0.2
7,966	+		GFF6512	0.40	-1.3
7,967	-		GFF6512	0.40	-1.8
7,967	-		GFF6512	0.40	-1.6
7,967	-		GFF6512	0.40	-0.0
8,370	+				+0.4
8,371	-				+1.5