Strain Fitness in Variovorax sp. SCN45 around GFF6504

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6503 and GFF6504 overlap by 4 nucleotidesGFF6504 and GFF6505 are separated by 4 nucleotidesGFF6505 and GFF6506 are separated by 112 nucleotides GFF6503 - no description, at 105 to 368 GFF6503 GFF6504 - no description, at 365 to 1,111 GFF6504 GFF6505 - no description, at 1,116 to 1,529 GFF6505 GFF6506 - DNA-binding protein HU-beta, at 1,642 to 1,953 GFF6506 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.071 kb on + strandat 0.071 kb on + strandat 0.094 kb on - strandat 0.111 kb on + strandat 0.191 kb on - strand, within GFF6503at 0.191 kb on - strand, within GFF6503at 0.191 kb on - strand, within GFF6503at 0.264 kb on + strand, within GFF6503at 0.264 kb on + strand, within GFF6503at 0.264 kb on + strand, within GFF6503at 0.265 kb on - strand, within GFF6503at 0.265 kb on - strand, within GFF6503at 0.265 kb on - strand, within GFF6503at 0.333 kb on + strand, within GFF6503at 0.333 kb on + strand, within GFF6503at 0.333 kb on + strand, within GFF6503at 0.334 kb on - strand, within GFF6503at 0.334 kb on - strand, within GFF6503at 0.334 kb on - strand, within GFF6503at 0.366 kb on + strandat 0.366 kb on + strandat 0.367 kb on - strandat 0.367 kb on - strandat 0.555 kb on + strand, within GFF6504at 0.556 kb on - strand, within GFF6504at 0.556 kb on - strand, within GFF6504at 0.556 kb on - strand, within GFF6504at 0.657 kb on + strand, within GFF6504at 0.657 kb on + strand, within GFF6504at 0.657 kb on + strand, within GFF6504at 0.658 kb on - strand, within GFF6504at 0.658 kb on - strand, within GFF6504at 0.779 kb on - strand, within GFF6504at 0.795 kb on + strand, within GFF6504at 0.795 kb on + strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.932 kb on + strand, within GFF6504at 0.933 kb on - strand, within GFF6504at 0.987 kb on - strand, within GFF6504at 0.987 kb on - strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.994 kb on - strand, within GFF6504at 1.045 kb on + strandat 1.046 kb on - strandat 1.099 kb on + strandat 1.339 kb on - strand, within GFF6505at 1.339 kb on - strand, within GFF6505at 1.582 kb on - strandat 1.596 kb on - strandat 1.613 kb on + strandat 1.643 kb on + strandat 1.644 kb on - strandat 1.644 kb on - strandat 1.644 kb on - strandat 1.906 kb on + strand, within GFF6506at 1.906 kb on + strand, within GFF6506at 1.906 kb on + strand, within GFF6506at 1.906 kb on + strand, within GFF6506at 1.907 kb on - strand, within GFF6506at 1.907 kb on - strand, within GFF6506at 1.972 kb on + strandat 1.973 kb on - strandat 1.990 kb on + strandat 2.003 kb on + strandat 2.003 kb on + strandat 2.004 kb on - strandat 2.004 kb on - strandat 2.004 kb on - strandat 2.105 kb on + strandat 2.105 kb on + strandat 2.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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71 + +0.6
71 + -0.8
94 - -0.9
111 + -1.8
191 - GFF6503 0.33 -0.5
191 - GFF6503 0.33 +0.2
191 - GFF6503 0.33 +0.4
264 + GFF6503 0.60 -0.8
264 + GFF6503 0.60 +0.5
264 + GFF6503 0.60 +1.2
265 - GFF6503 0.61 +0.0
265 - GFF6503 0.61 +0.5
265 - GFF6503 0.61 +0.3
333 + GFF6503 0.86 -0.2
333 + GFF6503 0.86 +0.1
333 + GFF6503 0.86 -0.0
334 - GFF6503 0.87 +0.8
334 - GFF6503 0.87 +1.5
334 - GFF6503 0.87 +0.1
366 + -1.0
366 + -0.0
367 - +1.0
367 - -1.4
555 + GFF6504 0.25 -1.5
556 - GFF6504 0.26 -1.1
556 - GFF6504 0.26 -0.0
556 - GFF6504 0.26 -1.8
657 + GFF6504 0.39 +0.7
657 + GFF6504 0.39 +0.3
657 + GFF6504 0.39 +0.1
658 - GFF6504 0.39 +0.5
658 - GFF6504 0.39 -0.0
779 - GFF6504 0.55 -0.7
795 + GFF6504 0.58 -0.5
795 + GFF6504 0.58 +0.7
796 - GFF6504 0.58 -0.3
796 - GFF6504 0.58 +0.6
796 - GFF6504 0.58 -0.4
796 - GFF6504 0.58 -0.4
796 - GFF6504 0.58 -0.2
932 + GFF6504 0.76 +1.5
933 - GFF6504 0.76 -2.0
987 - GFF6504 0.83 -0.1
987 - GFF6504 0.83 -0.6
988 + GFF6504 0.83 +0.0
988 + GFF6504 0.83 +1.4
988 + GFF6504 0.83 +1.3
988 + GFF6504 0.83 +0.2
988 + GFF6504 0.83 -1.8
988 + GFF6504 0.83 -0.1
988 + GFF6504 0.83 +1.5
989 - GFF6504 0.84 -0.8
989 - GFF6504 0.84 -1.8
989 - GFF6504 0.84 +2.5
989 - GFF6504 0.84 +1.5
989 - GFF6504 0.84 -0.3
989 - GFF6504 0.84 +0.4
994 - GFF6504 0.84 +0.3
1,045 + -0.7
1,046 - +0.0
1,099 + +0.1
1,339 - GFF6505 0.54 +0.7
1,339 - GFF6505 0.54 -1.6
1,582 - +0.7
1,596 - +0.5
1,613 + +1.0
1,643 + +0.5
1,644 - +0.2
1,644 - -0.8
1,644 - -0.2
1,906 + GFF6506 0.85 -0.6
1,906 + GFF6506 0.85 -3.5
1,906 + GFF6506 0.85 -0.1
1,906 + GFF6506 0.85 +0.4
1,907 - GFF6506 0.85 -1.0
1,907 - GFF6506 0.85 +0.1
1,972 + +0.5
1,973 - -0.2
1,990 + -0.7
2,003 + -0.4
2,003 + -0.3
2,004 - -0.2
2,004 - -0.4
2,004 - -0.0
2,105 + -0.3
2,105 + -0.4
2,106 - +0.1

Or see this region's nucleotide sequence