Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6367 and GFF6368 are separated by 0 nucleotides GFF6368 and GFF6369 overlap by 4 nucleotides GFF6369 and GFF6370 are separated by 96 nucleotides GFF6370 and GFF6371 are separated by 68 nucleotides
GFF6367 - T6SS component TssF (ImpG/VasA), at 36,278 to 38,149
GFF6367
GFF6368 - T6SS lysozyme-like component TssE, at 38,150 to 38,698
GFF6368
GFF6369 - T6SS associated component TagJ (ImpE), at 38,695 to 39,558
GFF6369
GFF6370 - T6SS component Hcp, at 39,655 to 40,119
GFF6370
GFF6371 - T6SS component TssC (ImpC/VipB), at 40,188 to 41,696
GFF6371
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 38.104 kb on + strand at 38.105 kb on - strand at 38.106 kb on + strand at 38.106 kb on + strand at 38.127 kb on + strand at 38.434 kb on - strand, within GFF6368 at 38.795 kb on + strand, within GFF6369 at 39.164 kb on - strand, within GFF6369 at 39.767 kb on + strand, within GFF6370 at 39.767 kb on + strand, within GFF6370 at 39.767 kb on + strand, within GFF6370 at 40.155 kb on - strand at 40.261 kb on + strand at 40.261 kb on + strand at 40.262 kb on - strand at 40.396 kb on + strand, within GFF6371 at 40.396 kb on + strand, within GFF6371 at 40.396 kb on + strand, within GFF6371 at 40.483 kb on + strand, within GFF6371 at 40.513 kb on + strand, within GFF6371 at 40.513 kb on + strand, within GFF6371
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 38,104 + -0.6 38,105 - -0.1 38,106 + -0.8 38,106 + +0.1 38,127 + -0.5 38,434 - GFF6368 0.52 -0.8 38,795 + GFF6369 0.12 +0.0 39,164 - GFF6369 0.54 +0.4 39,767 + GFF6370 0.24 -0.1 39,767 + GFF6370 0.24 -0.4 39,767 + GFF6370 0.24 +0.2 40,155 - +0.1 40,261 + -1.2 40,261 + -0.1 40,262 - +0.1 40,396 + GFF6371 0.14 +0.0 40,396 + GFF6371 0.14 +0.1 40,396 + GFF6371 0.14 +1.2 40,483 + GFF6371 0.20 +0.7 40,513 + GFF6371 0.22 +0.2 40,513 + GFF6371 0.22 -1.7
Or see this region's nucleotide sequence