Strain Fitness in Variovorax sp. SCN45 around GFF6339

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
2,467	-		GFF6337	0.50	+0.6
2,688	+		GFF6337	0.76	+0.4
2,689	-		GFF6337	0.76	+0.0
2,689	-		GFF6337	0.76	-1.0
2,814	+				-1.0
2,814	+				+0.3
2,983	+		GFF6338	0.77	+0.1
2,983	+		GFF6338	0.77	+0.6
2,983	+		GFF6338	0.77	-1.0
2,983	+		GFF6338	0.77	-1.4
2,984	-		GFF6338	0.78	-0.5
2,984	-		GFF6338	0.78	-0.2
2,984	-		GFF6338	0.78	-2.5
3,006	+				+0.4
3,162	-				-0.6
3,162	-				+0.0
3,162	-				+0.0
3,359	+				+0.3
3,360	-				+0.0
3,385	+				-0.2
3,396	+				+0.2
3,397	-				-1.6
3,399	+				+1.3
3,399	+				-0.2
3,568	+				-0.4
3,568	+				-0.9
3,568	+				-0.4
3,569	-				+0.0
3,569	-				-0.5
3,569	-				-0.7
3,569	-				+0.0
3,569	-				+0.1
3,569	-				-0.6
3,635	-				-0.6
3,635	-				+0.3
3,635	-				-0.8
3,635	-				+0.0
3,635	-				+0.3
3,635	-				-2.5
3,639	+				-0.4
3,639	+				-0.8
3,640	-				-0.3
3,686	-				-0.9
3,737	+				+0.6
3,737	+				+2.6
3,738	-				-0.2
3,774	-				+0.7
3,780	-				-0.5
3,797	+				-0.5
3,797	+				-0.6
3,798	-				+1.6
3,896	-		GFF6340	0.58	-0.1
3,896	-		GFF6340	0.58	-0.3
4,069	+				-0.5
4,069	+				+0.6
4,070	-				-0.3
4,070	-				-2.1
4,116	-				+0.0
4,123	-				+0.4
4,200	+				+0.8
4,200	+				-0.2
4,201	-				+0.1
4,201	-				-0.7
4,201	-				-1.8
4,201	-				-2.3
4,201	-				+0.2
4,209	+				-0.1
4,253	+				+0.4
4,271	+				+0.4
4,272	-				+0.7
4,272	-				+0.2
4,390	+				+1.2
4,390	+				+0.1
4,391	-				-1.5
4,391	-				+0.2
4,439	-				+0.2