Strain Fitness in Variovorax sp. SCN45 around GFF6166

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6164 and GFF6165 overlap by 4 nucleotidesGFF6165 and GFF6166 are separated by 49 nucleotidesGFF6166 and GFF6167 are separated by 109 nucleotides GFF6164 - FIG01094124: hypothetical protein, at 69,691 to 70,740 GFF6164 GFF6165 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 70,737 to 71,603 GFF6165 GFF6166 - Transcriptional regulator, AcrR family, at 71,653 to 72,312 GFF6166 GFF6167 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 72,422 to 73,426 GFF6167 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 70.668 kb on - strandat 70.668 kb on - strandat 70.796 kb on - strandat 70.796 kb on - strandat 70.972 kb on + strand, within GFF6165at 70.972 kb on + strand, within GFF6165at 71.146 kb on + strand, within GFF6165at 71.147 kb on - strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.345 kb on - strand, within GFF6165at 71.345 kb on - strand, within GFF6165at 71.567 kb on - strandat 71.582 kb on - strandat 71.603 kb on + strandat 71.603 kb on + strandat 71.603 kb on + strandat 71.604 kb on - strandat 71.604 kb on - strandat 71.604 kb on - strandat 71.778 kb on - strand, within GFF6166at 71.778 kb on - strand, within GFF6166at 71.801 kb on + strand, within GFF6166at 71.801 kb on + strand, within GFF6166at 71.801 kb on + strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.987 kb on + strand, within GFF6166at 71.988 kb on - strand, within GFF6166at 72.080 kb on + strand, within GFF6166at 72.081 kb on - strand, within GFF6166at 72.104 kb on + strand, within GFF6166at 72.104 kb on + strand, within GFF6166at 72.105 kb on - strand, within GFF6166at 72.105 kb on - strand, within GFF6166at 72.105 kb on - strand, within GFF6166at 72.105 kb on - strand, within GFF6166at 72.128 kb on + strand, within GFF6166at 72.128 kb on + strand, within GFF6166at 72.129 kb on - strand, within GFF6166at 72.129 kb on - strand, within GFF6166at 72.129 kb on - strand, within GFF6166at 72.129 kb on - strand, within GFF6166at 72.134 kb on + strand, within GFF6166at 72.135 kb on - strand, within GFF6166at 72.135 kb on - strand, within GFF6166at 72.375 kb on - strandat 72.558 kb on - strand, within GFF6167at 72.558 kb on - strand, within GFF6167at 72.558 kb on - strand, within GFF6167at 72.560 kb on + strand, within GFF6167at 72.560 kb on + strand, within GFF6167at 72.560 kb on + strand, within GFF6167at 72.561 kb on - strand, within GFF6167at 72.561 kb on - strand, within GFF6167at 72.582 kb on - strand, within GFF6167at 72.743 kb on + strand, within GFF6167at 72.767 kb on + strand, within GFF6167at 72.767 kb on + strand, within GFF6167at 72.767 kb on + strand, within GFF6167at 72.767 kb on + strand, within GFF6167at 72.767 kb on + strand, within GFF6167at 72.977 kb on + strand, within GFF6167at 72.978 kb on - strand, within GFF6167at 72.978 kb on - strand, within GFF6167at 73.058 kb on + strand, within GFF6167at 73.059 kb on - strand, within GFF6167at 73.059 kb on - strand, within GFF6167at 73.088 kb on + strand, within GFF6167at 73.145 kb on + strand, within GFF6167at 73.145 kb on + strand, within GFF6167

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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70,668 - +0.1
70,668 - +0.0
70,796 - -0.4
70,796 - -0.1
70,972 + GFF6165 0.27 -0.3
70,972 + GFF6165 0.27 +0.0
71,146 + GFF6165 0.47 -0.3
71,147 - GFF6165 0.47 +0.4
71,344 + GFF6165 0.70 -1.4
71,344 + GFF6165 0.70 +0.8
71,344 + GFF6165 0.70 -0.4
71,344 + GFF6165 0.70 +0.6
71,344 + GFF6165 0.70 +2.2
71,344 + GFF6165 0.70 +0.7
71,344 + GFF6165 0.70 -1.6
71,345 - GFF6165 0.70 +0.5
71,345 - GFF6165 0.70 +0.8
71,567 - -0.2
71,582 - +1.0
71,603 + -0.8
71,603 + -0.1
71,603 + -1.4
71,604 - -0.4
71,604 - +0.3
71,604 - -1.4
71,778 - GFF6166 0.19 +0.0
71,778 - GFF6166 0.19 -1.5
71,801 + GFF6166 0.22 -0.8
71,801 + GFF6166 0.22 +0.0
71,801 + GFF6166 0.22 -1.8
71,802 - GFF6166 0.23 +0.7
71,802 - GFF6166 0.23 -0.3
71,802 - GFF6166 0.23 -2.2
71,802 - GFF6166 0.23 -0.6
71,802 - GFF6166 0.23 -0.3
71,802 - GFF6166 0.23 +1.2
71,802 - GFF6166 0.23 -0.8
71,802 - GFF6166 0.23 +1.6
71,987 + GFF6166 0.51 -0.6
71,988 - GFF6166 0.51 +0.4
72,080 + GFF6166 0.65 +0.2
72,081 - GFF6166 0.65 -0.4
72,104 + GFF6166 0.68 -0.7
72,104 + GFF6166 0.68 -0.7
72,105 - GFF6166 0.68 -0.4
72,105 - GFF6166 0.68 -0.4
72,105 - GFF6166 0.68 +0.0
72,105 - GFF6166 0.68 -1.2
72,128 + GFF6166 0.72 -0.7
72,128 + GFF6166 0.72 -1.4
72,129 - GFF6166 0.72 +0.4
72,129 - GFF6166 0.72 +0.6
72,129 - GFF6166 0.72 -0.4
72,129 - GFF6166 0.72 +0.8
72,134 + GFF6166 0.73 -0.1
72,135 - GFF6166 0.73 -1.9
72,135 - GFF6166 0.73 +0.7
72,375 - -0.2
72,558 - GFF6167 0.14 -0.8
72,558 - GFF6167 0.14 -0.1
72,558 - GFF6167 0.14 +2.6
72,560 + GFF6167 0.14 +0.3
72,560 + GFF6167 0.14 -0.2
72,560 + GFF6167 0.14 +0.6
72,561 - GFF6167 0.14 +1.2
72,561 - GFF6167 0.14 +0.4
72,582 - GFF6167 0.16 -0.2
72,743 + GFF6167 0.32 +0.8
72,767 + GFF6167 0.34 -0.2
72,767 + GFF6167 0.34 -0.4
72,767 + GFF6167 0.34 -0.1
72,767 + GFF6167 0.34 +0.0
72,767 + GFF6167 0.34 +0.0
72,977 + GFF6167 0.55 -0.9
72,978 - GFF6167 0.55 -0.3
72,978 - GFF6167 0.55 +0.0
73,058 + GFF6167 0.63 -0.7
73,059 - GFF6167 0.63 -0.8
73,059 - GFF6167 0.63 +0.5
73,088 + GFF6167 0.66 -1.3
73,145 + GFF6167 0.72 +0.4
73,145 + GFF6167 0.72 +0.6

Or see this region's nucleotide sequence