Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5808 and GFF5809 are separated by 190 nucleotides GFF5809 and GFF5810 are separated by 4 nucleotides
GFF5808 - Putative oxidoreductase, at 183,771 to 184,781
GFF5808
GFF5809 - Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system, at 184,972 to 186,465
GFF5809
GFF5810 - Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA, at 186,470 to 187,705
GFF5810
Position (kb) 184
185
186
187 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 184.156 kb on - strand, within GFF5808 at 184.242 kb on + strand, within GFF5808 at 184.242 kb on + strand, within GFF5808 at 184.256 kb on + strand, within GFF5808 at 184.320 kb on + strand, within GFF5808 at 184.320 kb on + strand, within GFF5808 at 184.321 kb on - strand, within GFF5808 at 184.342 kb on - strand, within GFF5808 at 184.416 kb on + strand, within GFF5808 at 184.417 kb on - strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.516 kb on - strand, within GFF5808 at 184.704 kb on + strand at 184.704 kb on + strand at 184.705 kb on - strand at 184.925 kb on + strand at 184.957 kb on + strand at 184.957 kb on + strand at 184.958 kb on - strand at 184.958 kb on - strand at 184.958 kb on - strand at 184.997 kb on + strand at 185.059 kb on + strand at 185.059 kb on + strand at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.516 kb on - strand, within GFF5809 at 185.575 kb on + strand, within GFF5809 at 185.609 kb on - strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.956 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.298 kb on + strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.686 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.915 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.254 kb on - strand, within GFF5810
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 184,156 - GFF5808 0.38 +0.0 184,242 + GFF5808 0.47 -0.0 184,242 + GFF5808 0.47 -0.0 184,256 + GFF5808 0.48 -1.0 184,320 + GFF5808 0.54 -1.2 184,320 + GFF5808 0.54 -0.4 184,321 - GFF5808 0.54 +2.2 184,342 - GFF5808 0.56 +0.0 184,416 + GFF5808 0.64 -1.0 184,417 - GFF5808 0.64 +0.5 184,452 + GFF5808 0.67 +0.7 184,452 + GFF5808 0.67 +0.1 184,452 + GFF5808 0.67 -0.1 184,515 + GFF5808 0.74 -0.1 184,515 + GFF5808 0.74 -0.4 184,515 + GFF5808 0.74 +0.3 184,515 + GFF5808 0.74 -0.1 184,516 - GFF5808 0.74 -0.2 184,704 + -1.3 184,704 + -0.5 184,705 - -0.1 184,925 + +0.1 184,957 + -0.3 184,957 + -1.2 184,958 - -1.3 184,958 - +1.4 184,958 - -0.4 184,997 + -0.4 185,059 + +1.0 185,059 + -0.8 185,515 + GFF5809 0.36 +0.4 185,515 + GFF5809 0.36 -0.3 185,515 + GFF5809 0.36 +3.4 185,516 - GFF5809 0.36 +0.2 185,575 + GFF5809 0.40 +0.3 185,609 - GFF5809 0.43 -1.2 185,953 + GFF5809 0.66 -2.0 185,953 + GFF5809 0.66 +1.0 185,954 - GFF5809 0.66 -1.2 185,954 - GFF5809 0.66 -1.5 185,954 - GFF5809 0.66 +1.0 185,954 - GFF5809 0.66 -0.2 185,954 - GFF5809 0.66 +0.8 185,954 - GFF5809 0.66 +0.5 185,956 + GFF5809 0.66 -0.8 186,139 + GFF5809 0.78 -0.1 186,139 + GFF5809 0.78 +1.1 186,139 + GFF5809 0.78 -1.4 186,139 + GFF5809 0.78 +0.9 186,140 - GFF5809 0.78 +0.3 186,140 - GFF5809 0.78 +0.9 186,298 + GFF5809 0.89 -0.9 186,299 - GFF5809 0.89 +0.3 186,299 - GFF5809 0.89 -1.2 186,299 - GFF5809 0.89 +1.2 186,686 + GFF5810 0.17 +0.2 186,914 + GFF5810 0.36 +0.2 186,914 + GFF5810 0.36 -0.4 186,915 - GFF5810 0.36 -0.5 187,026 - GFF5810 0.45 +0.2 187,026 - GFF5810 0.45 -0.7 187,254 - GFF5810 0.63 -0.8
Or see this region's nucleotide sequence