Strain Fitness in Variovorax sp. SCN45 around GFF5733

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5732 and GFF5733 are separated by 150 nucleotidesGFF5733 and GFF5734 are separated by 101 nucleotides GFF5732 - Methyl-accepting chemotaxis sensor/transducer protein, at 103,129 to 104,832 GFF5732 GFF5733 - Methyl-accepting chemotaxis sensor/transducer protein, at 104,983 to 106,617 GFF5733 GFF5734 - Methyl-accepting chemotaxis sensor/transducer protein, at 106,719 to 108,449 GFF5734 Position (kb) 104 105 106 107Strain fitness (log2 ratio) -1 0 1at 105.122 kb on - strandat 105.232 kb on + strand, within GFF5733at 105.443 kb on - strand, within GFF5733at 105.443 kb on - strand, within GFF5733at 107.062 kb on - strand, within GFF5734at 107.062 kb on - strand, within GFF5734at 107.223 kb on + strand, within GFF5734

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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105,122 - -0.7
105,232 + GFF5733 0.15 -0.4
105,443 - GFF5733 0.28 -1.4
105,443 - GFF5733 0.28 +0.2
107,062 - GFF5734 0.20 +0.1
107,062 - GFF5734 0.20 +0.8
107,223 + GFF5734 0.29 -0.2

Or see this region's nucleotide sequence