Strain Fitness in Variovorax sp. SCN45 around GFF5683

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5682 and GFF5683 are separated by 61 nucleotidesGFF5683 and GFF5684 overlap by 4 nucleotides GFF5682 - TRAP-type transport system, periplasmic component, at 57,685 to 58,698 GFF5682 GFF5683 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 58,760 to 60,349 GFF5683 GFF5684 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 60,346 to 61,515 GFF5684 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 58.004 kb on + strand, within GFF5682at 58.004 kb on + strand, within GFF5682at 58.004 kb on + strand, within GFF5682at 58.004 kb on + strand, within GFF5682at 58.005 kb on - strand, within GFF5682at 58.005 kb on - strand, within GFF5682at 58.005 kb on - strand, within GFF5682at 58.019 kb on + strand, within GFF5682at 58.019 kb on + strand, within GFF5682at 58.019 kb on + strand, within GFF5682at 58.019 kb on + strand, within GFF5682at 58.020 kb on - strand, within GFF5682at 58.091 kb on + strand, within GFF5682at 58.091 kb on + strand, within GFF5682at 58.091 kb on + strand, within GFF5682at 58.092 kb on - strand, within GFF5682at 58.092 kb on - strand, within GFF5682at 58.092 kb on - strand, within GFF5682at 58.344 kb on - strand, within GFF5682at 58.344 kb on - strand, within GFF5682at 58.344 kb on - strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.592 kb on + strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.593 kb on - strand, within GFF5682at 58.598 kb on + strandat 58.598 kb on + strandat 58.598 kb on + strandat 58.598 kb on + strandat 58.598 kb on + strandat 58.599 kb on - strandat 58.599 kb on - strandat 58.709 kb on + strandat 58.709 kb on + strandat 58.709 kb on + strandat 58.709 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.716 kb on + strandat 58.717 kb on - strandat 58.717 kb on - strandat 58.717 kb on - strandat 58.717 kb on - strandat 58.717 kb on - strandat 58.812 kb on - strandat 58.812 kb on - strandat 58.812 kb on - strandat 58.812 kb on - strandat 58.815 kb on + strandat 58.815 kb on + strandat 58.837 kb on - strandat 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.085 kb on + strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.086 kb on - strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.112 kb on + strand, within GFF5683at 59.113 kb on - strand, within GFF5683at 59.113 kb on - strand, within GFF5683at 59.113 kb on - strand, within GFF5683at 59.206 kb on - strand, within GFF5683at 59.415 kb on + strand, within GFF5683at 59.415 kb on + strand, within GFF5683at 59.415 kb on + strand, within GFF5683at 59.416 kb on - strand, within GFF5683at 59.416 kb on - strand, within GFF5683at 59.470 kb on - strand, within GFF5683at 59.470 kb on - strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.487 kb on + strand, within GFF5683at 59.488 kb on - strand, within GFF5683at 59.488 kb on - strand, within GFF5683at 59.496 kb on + strand, within GFF5683at 59.496 kb on + strand, within GFF5683at 59.496 kb on + strand, within GFF5683at 59.838 kb on + strand, within GFF5683at 59.838 kb on + strand, within GFF5683at 59.838 kb on + strand, within GFF5683at 59.838 kb on + strand, within GFF5683at 59.838 kb on + strand, within GFF5683at 59.838 kb on + strand, within GFF5683at 59.839 kb on - strand, within GFF5683at 59.839 kb on - strand, within GFF5683at 59.839 kb on - strand, within GFF5683at 59.844 kb on + strand, within GFF5683at 59.844 kb on + strand, within GFF5683at 59.844 kb on + strand, within GFF5683at 59.844 kb on + strand, within GFF5683at 59.844 kb on + strand, within GFF5683at 59.845 kb on - strand, within GFF5683at 59.845 kb on - strand, within GFF5683at 59.919 kb on + strand, within GFF5683at 59.920 kb on - strand, within GFF5683at 60.057 kb on + strand, within GFF5683at 60.058 kb on - strand, within GFF5683at 60.058 kb on - strand, within GFF5683at 60.371 kb on + strandat 60.371 kb on + strandat 60.371 kb on + strandat 60.371 kb on + strandat 60.372 kb on - strandat 60.372 kb on - strandat 60.372 kb on - strandat 60.624 kb on - strand, within GFF5684at 60.624 kb on - strand, within GFF5684at 60.771 kb on - strand, within GFF5684at 60.771 kb on - strand, within GFF5684at 60.971 kb on + strand, within GFF5684at 60.972 kb on - strand, within GFF5684at 61.053 kb on - strand, within GFF5684at 61.118 kb on + strand, within GFF5684at 61.118 kb on + strand, within GFF5684at 61.118 kb on + strand, within GFF5684at 61.118 kb on + strand, within GFF5684at 61.118 kb on + strand, within GFF5684at 61.119 kb on - strand, within GFF5684

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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58,004 + GFF5682 0.31 -0.2
58,004 + GFF5682 0.31 -0.1
58,004 + GFF5682 0.31 -0.1
58,004 + GFF5682 0.31 +0.5
58,005 - GFF5682 0.32 -3.3
58,005 - GFF5682 0.32 -0.1
58,005 - GFF5682 0.32 +0.3
58,019 + GFF5682 0.33 -1.1
58,019 + GFF5682 0.33 -0.0
58,019 + GFF5682 0.33 -0.2
58,019 + GFF5682 0.33 +0.4
58,020 - GFF5682 0.33 -1.8
58,091 + GFF5682 0.40 +0.3
58,091 + GFF5682 0.40 +0.0
58,091 + GFF5682 0.40 +0.9
58,092 - GFF5682 0.40 -0.5
58,092 - GFF5682 0.40 -0.6
58,092 - GFF5682 0.40 -0.3
58,344 - GFF5682 0.65 -0.0
58,344 - GFF5682 0.65 -0.6
58,344 - GFF5682 0.65 -0.2
58,592 + GFF5682 0.89 -0.4
58,592 + GFF5682 0.89 +0.2
58,592 + GFF5682 0.89 -0.8
58,592 + GFF5682 0.89 +0.2
58,592 + GFF5682 0.89 +0.2
58,593 - GFF5682 0.90 +0.8
58,593 - GFF5682 0.90 -0.9
58,593 - GFF5682 0.90 +0.5
58,593 - GFF5682 0.90 +0.4
58,593 - GFF5682 0.90 +0.8
58,593 - GFF5682 0.90 +1.4
58,593 - GFF5682 0.90 -0.1
58,593 - GFF5682 0.90 -0.4
58,593 - GFF5682 0.90 +0.7
58,593 - GFF5682 0.90 -0.3
58,598 + -1.2
58,598 + -0.8
58,598 + -1.8
58,598 + -0.5
58,598 + -0.1
58,599 - -0.5
58,599 - -0.6
58,709 + -0.5
58,709 + -1.9
58,709 + -0.5
58,709 + -0.2
58,716 + -0.5
58,716 + -0.1
58,716 + +0.1
58,716 + -0.1
58,716 + +0.3
58,716 + -0.3
58,716 + -0.0
58,717 - +0.0
58,717 - -1.2
58,717 - -2.0
58,717 - -0.5
58,717 - -0.2
58,812 - -1.0
58,812 - -0.5
58,812 - -0.6
58,812 - -1.0
58,815 + +0.5
58,815 + -0.7
58,837 - +0.2
59,085 + GFF5683 0.20 -0.7
59,085 + GFF5683 0.20 -1.3
59,085 + GFF5683 0.20 -1.8
59,085 + GFF5683 0.20 +0.0
59,085 + GFF5683 0.20 -0.5
59,085 + GFF5683 0.20 +0.5
59,085 + GFF5683 0.20 +0.0
59,085 + GFF5683 0.20 -0.5
59,085 + GFF5683 0.20 -1.4
59,085 + GFF5683 0.20 -0.7
59,085 + GFF5683 0.20 -0.4
59,085 + GFF5683 0.20 -0.8
59,085 + GFF5683 0.20 -0.0
59,085 + GFF5683 0.20 -1.1
59,086 - GFF5683 0.21 +0.3
59,086 - GFF5683 0.21 -1.0
59,086 - GFF5683 0.21 +0.1
59,086 - GFF5683 0.21 +0.2
59,086 - GFF5683 0.21 -1.9
59,086 - GFF5683 0.21 -0.8
59,086 - GFF5683 0.21 +0.2
59,086 - GFF5683 0.21 +1.8
59,086 - GFF5683 0.21 +0.8
59,086 - GFF5683 0.21 +0.2
59,086 - GFF5683 0.21 -0.1
59,086 - GFF5683 0.21 -0.8
59,086 - GFF5683 0.21 +0.2
59,086 - GFF5683 0.21 -0.7
59,086 - GFF5683 0.21 +0.1
59,086 - GFF5683 0.21 +0.2
59,086 - GFF5683 0.21 -1.3
59,086 - GFF5683 0.21 -0.6
59,086 - GFF5683 0.21 -0.5
59,086 - GFF5683 0.21 -0.4
59,086 - GFF5683 0.21 +0.5
59,112 + GFF5683 0.22 +1.4
59,112 + GFF5683 0.22 -0.1
59,112 + GFF5683 0.22 +1.1
59,112 + GFF5683 0.22 +0.3
59,112 + GFF5683 0.22 -1.2
59,112 + GFF5683 0.22 +0.0
59,112 + GFF5683 0.22 -1.3
59,112 + GFF5683 0.22 +0.9
59,112 + GFF5683 0.22 -0.8
59,112 + GFF5683 0.22 -0.3
59,112 + GFF5683 0.22 +0.2
59,113 - GFF5683 0.22 -0.9
59,113 - GFF5683 0.22 +0.5
59,113 - GFF5683 0.22 +0.4
59,206 - GFF5683 0.28 -0.2
59,415 + GFF5683 0.41 +2.8
59,415 + GFF5683 0.41 -0.8
59,415 + GFF5683 0.41 -1.1
59,416 - GFF5683 0.41 -0.2
59,416 - GFF5683 0.41 -0.9
59,470 - GFF5683 0.45 -0.2
59,470 - GFF5683 0.45 -0.6
59,487 + GFF5683 0.46 +0.6
59,487 + GFF5683 0.46 -0.6
59,487 + GFF5683 0.46 -0.4
59,487 + GFF5683 0.46 -1.8
59,487 + GFF5683 0.46 +0.6
59,488 - GFF5683 0.46 +0.2
59,488 - GFF5683 0.46 -0.1
59,496 + GFF5683 0.46 -0.5
59,496 + GFF5683 0.46 -0.6
59,496 + GFF5683 0.46 -0.2
59,838 + GFF5683 0.68 -1.4
59,838 + GFF5683 0.68 -0.5
59,838 + GFF5683 0.68 -0.0
59,838 + GFF5683 0.68 -0.9
59,838 + GFF5683 0.68 -0.7
59,838 + GFF5683 0.68 -1.7
59,839 - GFF5683 0.68 +0.2
59,839 - GFF5683 0.68 -0.2
59,839 - GFF5683 0.68 +0.2
59,844 + GFF5683 0.68 -1.6
59,844 + GFF5683 0.68 -1.0
59,844 + GFF5683 0.68 -1.9
59,844 + GFF5683 0.68 -0.7
59,844 + GFF5683 0.68 -0.9
59,845 - GFF5683 0.68 -0.4
59,845 - GFF5683 0.68 -1.1
59,919 + GFF5683 0.73 +0.8
59,920 - GFF5683 0.73 +1.4
60,057 + GFF5683 0.82 -0.3
60,058 - GFF5683 0.82 -0.5
60,058 - GFF5683 0.82 -0.2
60,371 + -1.3
60,371 + -2.2
60,371 + -0.7
60,371 + -1.1
60,372 - -0.1
60,372 - +0.2
60,372 - -0.9
60,624 - GFF5684 0.24 -0.4
60,624 - GFF5684 0.24 -1.4
60,771 - GFF5684 0.36 +0.5
60,771 - GFF5684 0.36 -1.0
60,971 + GFF5684 0.53 -0.1
60,972 - GFF5684 0.54 -1.2
61,053 - GFF5684 0.60 -0.4
61,118 + GFF5684 0.66 +0.4
61,118 + GFF5684 0.66 -0.0
61,118 + GFF5684 0.66 -1.5
61,118 + GFF5684 0.66 -1.6
61,118 + GFF5684 0.66 -0.3
61,119 - GFF5684 0.66 -1.0

Or see this region's nucleotide sequence