Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5664 and GFF5665 are separated by 25 nucleotides GFF5665 and GFF5666 overlap by 4 nucleotides GFF5666 and GFF5667 are separated by 34 nucleotides GFF5667 and GFF5668 are separated by 111 nucleotides
GFF5664 - hypothetical protein, at 40,632 to 42,236
GFF5664
GFF5665 - no description, at 42,262 to 42,585
GFF5665
GFF5666 - Prevent host death protein, Phd antitoxin, at 42,582 to 42,854
GFF5666
GFF5667 - Transcriptional regulator, LysR family, at 42,889 to 43,779
GFF5667
GFF5668 - Uncharacterized MFS-type transporter, at 43,891 to 45,402
GFF5668
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 42.335 kb on + strand, within GFF5665 at 42.335 kb on + strand, within GFF5665 at 42.335 kb on + strand, within GFF5665 at 42.335 kb on + strand, within GFF5665 at 42.335 kb on + strand, within GFF5665 at 42.335 kb on + strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.336 kb on - strand, within GFF5665 at 42.352 kb on + strand, within GFF5665 at 42.352 kb on + strand, within GFF5665 at 42.353 kb on - strand, within GFF5665 at 42.353 kb on - strand, within GFF5665 at 42.353 kb on - strand, within GFF5665 at 42.353 kb on - strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.359 kb on + strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.360 kb on - strand, within GFF5665 at 42.395 kb on + strand, within GFF5665 at 42.395 kb on + strand, within GFF5665 at 42.488 kb on + strand, within GFF5665 at 42.489 kb on - strand, within GFF5665 at 42.530 kb on + strand, within GFF5665 at 42.530 kb on + strand, within GFF5665 at 42.530 kb on + strand, within GFF5665 at 42.530 kb on + strand, within GFF5665 at 42.531 kb on - strand, within GFF5665 at 42.531 kb on - strand, within GFF5665 at 42.531 kb on - strand, within GFF5665 at 42.582 kb on - strand at 42.709 kb on + strand, within GFF5666 at 42.709 kb on + strand, within GFF5666 at 42.820 kb on + strand, within GFF5666 at 42.820 kb on + strand, within GFF5666 at 42.820 kb on + strand, within GFF5666 at 42.821 kb on - strand, within GFF5666 at 42.821 kb on - strand, within GFF5666 at 42.821 kb on - strand, within GFF5666 at 42.821 kb on - strand, within GFF5666 at 42.821 kb on - strand, within GFF5666 at 42.821 kb on - strand, within GFF5666 at 42.821 kb on - strand, within GFF5666 at 42.821 kb on - strand, within GFF5666 at 42.875 kb on - strand at 42.890 kb on + strand at 42.891 kb on - strand at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.076 kb on + strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.077 kb on - strand, within GFF5667 at 43.208 kb on + strand, within GFF5667 at 43.208 kb on + strand, within GFF5667 at 43.208 kb on + strand, within GFF5667 at 43.208 kb on + strand, within GFF5667 at 43.209 kb on - strand, within GFF5667 at 43.271 kb on + strand, within GFF5667 at 43.272 kb on - strand, within GFF5667 at 43.272 kb on - strand, within GFF5667 at 43.272 kb on - strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.366 kb on + strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.367 kb on - strand, within GFF5667 at 43.430 kb on + strand, within GFF5667 at 43.828 kb on + strand at 43.847 kb on + strand at 43.847 kb on + strand at 43.847 kb on + strand at 43.848 kb on - strand at 43.894 kb on + strand at 43.894 kb on + strand at 43.894 kb on + strand at 43.894 kb on + strand at 43.894 kb on + strand at 43.894 kb on + strand at 43.894 kb on + strand at 43.894 kb on + strand at 43.895 kb on - strand at 43.895 kb on - strand at 44.104 kb on + strand, within GFF5668 at 44.104 kb on + strand, within GFF5668 at 44.104 kb on + strand, within GFF5668 at 44.104 kb on + strand, within GFF5668 at 44.104 kb on + strand, within GFF5668 at 44.105 kb on - strand, within GFF5668 at 44.105 kb on - strand, within GFF5668 at 44.105 kb on - strand, within GFF5668 at 44.105 kb on - strand, within GFF5668 at 44.105 kb on - strand, within GFF5668 at 44.716 kb on + strand, within GFF5668 at 44.716 kb on + strand, within GFF5668 at 44.716 kb on + strand, within GFF5668 at 44.716 kb on + strand, within GFF5668 at 44.717 kb on - strand, within GFF5668 at 44.717 kb on - strand, within GFF5668 at 44.717 kb on - strand, within GFF5668 at 44.717 kb on - strand, within GFF5668 at 44.717 kb on - strand, within GFF5668
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 42,335 + GFF5665 0.23 +0.4 42,335 + GFF5665 0.23 -0.3 42,335 + GFF5665 0.23 -0.2 42,335 + GFF5665 0.23 -0.6 42,335 + GFF5665 0.23 -0.3 42,335 + GFF5665 0.23 +0.4 42,336 - GFF5665 0.23 +0.9 42,336 - GFF5665 0.23 +0.2 42,336 - GFF5665 0.23 -0.4 42,336 - GFF5665 0.23 +1.2 42,336 - GFF5665 0.23 -1.0 42,336 - GFF5665 0.23 -0.1 42,336 - GFF5665 0.23 +0.9 42,336 - GFF5665 0.23 -1.0 42,336 - GFF5665 0.23 +0.2 42,336 - GFF5665 0.23 -0.0 42,336 - GFF5665 0.23 +0.2 42,352 + GFF5665 0.28 -0.1 42,352 + GFF5665 0.28 -0.4 42,353 - GFF5665 0.28 -0.7 42,353 - GFF5665 0.28 +0.1 42,353 - GFF5665 0.28 -0.5 42,353 - GFF5665 0.28 +0.2 42,359 + GFF5665 0.30 -0.1 42,359 + GFF5665 0.30 -0.1 42,359 + GFF5665 0.30 -0.1 42,359 + GFF5665 0.30 -1.1 42,359 + GFF5665 0.30 +1.5 42,359 + GFF5665 0.30 -1.0 42,359 + GFF5665 0.30 +0.1 42,359 + GFF5665 0.30 -0.8 42,359 + GFF5665 0.30 -0.3 42,359 + GFF5665 0.30 +0.4 42,359 + GFF5665 0.30 -0.0 42,359 + GFF5665 0.30 +0.4 42,359 + GFF5665 0.30 +0.3 42,359 + GFF5665 0.30 +0.5 42,359 + GFF5665 0.30 +0.5 42,359 + GFF5665 0.30 -0.1 42,359 + GFF5665 0.30 +0.2 42,360 - GFF5665 0.30 -0.8 42,360 - GFF5665 0.30 -0.4 42,360 - GFF5665 0.30 -0.2 42,360 - GFF5665 0.30 +0.4 42,360 - GFF5665 0.30 -0.2 42,360 - GFF5665 0.30 -0.5 42,360 - GFF5665 0.30 +0.0 42,360 - GFF5665 0.30 -1.1 42,360 - GFF5665 0.30 -0.5 42,360 - GFF5665 0.30 -1.3 42,360 - GFF5665 0.30 -1.1 42,360 - GFF5665 0.30 +0.7 42,360 - GFF5665 0.30 +0.2 42,360 - GFF5665 0.30 -0.8 42,395 + GFF5665 0.41 -1.0 42,395 + GFF5665 0.41 -0.5 42,488 + GFF5665 0.70 -0.3 42,489 - GFF5665 0.70 -0.4 42,530 + GFF5665 0.83 -0.3 42,530 + GFF5665 0.83 -0.1 42,530 + GFF5665 0.83 +1.8 42,530 + GFF5665 0.83 -0.2 42,531 - GFF5665 0.83 +0.0 42,531 - GFF5665 0.83 -1.6 42,531 - GFF5665 0.83 -1.0 42,582 - +1.2 42,709 + GFF5666 0.47 -0.4 42,709 + GFF5666 0.47 -0.4 42,820 + GFF5666 0.87 -0.2 42,820 + GFF5666 0.87 -3.1 42,820 + GFF5666 0.87 -1.7 42,821 - GFF5666 0.88 -1.5 42,821 - GFF5666 0.88 -0.5 42,821 - GFF5666 0.88 -0.8 42,821 - GFF5666 0.88 -3.5 42,821 - GFF5666 0.88 -0.8 42,821 - GFF5666 0.88 +0.2 42,821 - GFF5666 0.88 -0.2 42,821 - GFF5666 0.88 -2.4 42,875 - -0.2 42,890 + +0.2 42,891 - +1.8 43,076 + GFF5667 0.21 +0.5 43,076 + GFF5667 0.21 +1.5 43,076 + GFF5667 0.21 +0.4 43,076 + GFF5667 0.21 -1.3 43,076 + GFF5667 0.21 -0.9 43,076 + GFF5667 0.21 +1.4 43,076 + GFF5667 0.21 +1.2 43,076 + GFF5667 0.21 +0.5 43,076 + GFF5667 0.21 -0.4 43,076 + GFF5667 0.21 -0.2 43,076 + GFF5667 0.21 -2.0 43,076 + GFF5667 0.21 -0.1 43,076 + GFF5667 0.21 -0.4 43,076 + GFF5667 0.21 +1.8 43,076 + GFF5667 0.21 +0.5 43,076 + GFF5667 0.21 -0.7 43,077 - GFF5667 0.21 +0.3 43,077 - GFF5667 0.21 +0.5 43,077 - GFF5667 0.21 -0.2 43,077 - GFF5667 0.21 +0.5 43,077 - GFF5667 0.21 -0.2 43,077 - GFF5667 0.21 -0.8 43,077 - GFF5667 0.21 +0.6 43,077 - GFF5667 0.21 -1.4 43,077 - GFF5667 0.21 -0.8 43,077 - GFF5667 0.21 +1.8 43,077 - GFF5667 0.21 -2.3 43,077 - GFF5667 0.21 +0.3 43,208 + GFF5667 0.36 -1.4 43,208 + GFF5667 0.36 +1.1 43,208 + GFF5667 0.36 -1.4 43,208 + GFF5667 0.36 -0.8 43,209 - GFF5667 0.36 +0.6 43,271 + GFF5667 0.43 +0.2 43,272 - GFF5667 0.43 +0.3 43,272 - GFF5667 0.43 +0.6 43,272 - GFF5667 0.43 +0.8 43,366 + GFF5667 0.54 -0.9 43,366 + GFF5667 0.54 -0.9 43,366 + GFF5667 0.54 -0.2 43,366 + GFF5667 0.54 -1.7 43,366 + GFF5667 0.54 +0.9 43,366 + GFF5667 0.54 -1.3 43,366 + GFF5667 0.54 -0.6 43,366 + GFF5667 0.54 -0.0 43,366 + GFF5667 0.54 -0.3 43,366 + GFF5667 0.54 -0.5 43,366 + GFF5667 0.54 +0.9 43,366 + GFF5667 0.54 -2.7 43,366 + GFF5667 0.54 +0.4 43,366 + GFF5667 0.54 +0.7 43,366 + GFF5667 0.54 -0.5 43,366 + GFF5667 0.54 -0.3 43,366 + GFF5667 0.54 -0.4 43,366 + GFF5667 0.54 -0.6 43,366 + GFF5667 0.54 +0.5 43,367 - GFF5667 0.54 +0.4 43,367 - GFF5667 0.54 -0.3 43,367 - GFF5667 0.54 -1.2 43,367 - GFF5667 0.54 +0.6 43,367 - GFF5667 0.54 +1.0 43,367 - GFF5667 0.54 +2.4 43,367 - GFF5667 0.54 +0.6 43,367 - GFF5667 0.54 +0.1 43,367 - GFF5667 0.54 +0.1 43,367 - GFF5667 0.54 -0.3 43,367 - GFF5667 0.54 -0.3 43,367 - GFF5667 0.54 -1.8 43,367 - GFF5667 0.54 -0.4 43,367 - GFF5667 0.54 -0.0 43,367 - GFF5667 0.54 -0.5 43,430 + GFF5667 0.61 -0.7 43,828 + +0.1 43,847 + -2.6 43,847 + -1.0 43,847 + -0.4 43,848 - -1.3 43,894 + +0.0 43,894 + +2.8 43,894 + -1.2 43,894 + -0.9 43,894 + -1.5 43,894 + -0.0 43,894 + -0.8 43,894 + -0.2 43,895 - -0.4 43,895 - -0.2 44,104 + GFF5668 0.14 -0.5 44,104 + GFF5668 0.14 -1.7 44,104 + GFF5668 0.14 -0.4 44,104 + GFF5668 0.14 -0.5 44,104 + GFF5668 0.14 -0.0 44,105 - GFF5668 0.14 -1.2 44,105 - GFF5668 0.14 -0.1 44,105 - GFF5668 0.14 -1.0 44,105 - GFF5668 0.14 -0.3 44,105 - GFF5668 0.14 -0.9 44,716 + GFF5668 0.55 +0.6 44,716 + GFF5668 0.55 +0.2 44,716 + GFF5668 0.55 -0.4 44,716 + GFF5668 0.55 -0.4 44,717 - GFF5668 0.55 -0.0 44,717 - GFF5668 0.55 -0.8 44,717 - GFF5668 0.55 +0.2 44,717 - GFF5668 0.55 +0.2 44,717 - GFF5668 0.55 +1.0
Or see this region's nucleotide sequence