Strain Fitness in Variovorax sp. SCN45 around GFF5636

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5634 and GFF5635 are separated by 173 nucleotidesGFF5635 and GFF5636 are separated by 44 nucleotidesGFF5636 and GFF5637 overlap by 4 nucleotidesGFF5637 and GFF5638 are separated by 34 nucleotides GFF5634 - no description, at 11,120 to 11,296 GFF5634 GFF5635 - Molybdenum ABC transporter permease protein ModB, at 11,470 to 12,153 GFF5635 GFF5636 - Molybdenum ABC transporter, substrate-binding protein ModA, at 12,198 to 12,947 GFF5636 GFF5637 - Molybdenum ABC transporter ATP-binding protein ModC, at 12,944 to 13,732 GFF5637 GFF5638 - no description, at 13,767 to 14,048 GFF5638 Position (kb) 12 13Strain fitness (log2 ratio) -2 -1 0 1 2at 11.381 kb on + strandat 11.381 kb on + strandat 11.381 kb on + strandat 11.381 kb on + strandat 11.381 kb on + strandat 11.381 kb on + strandat 11.382 kb on - strandat 11.382 kb on - strandat 11.382 kb on - strandat 11.382 kb on - strandat 11.382 kb on - strandat 11.382 kb on - strandat 11.382 kb on - strandat 11.382 kb on - strandat 11.383 kb on + strandat 11.393 kb on + strandat 11.393 kb on + strandat 11.393 kb on + strandat 11.393 kb on + strandat 11.393 kb on + strandat 11.393 kb on + strandat 11.393 kb on + strandat 11.393 kb on + strandat 11.393 kb on + strandat 11.393 kb on + strandat 11.394 kb on - strandat 11.394 kb on - strandat 11.395 kb on + strandat 11.395 kb on + strandat 11.395 kb on + strandat 11.395 kb on + strandat 11.395 kb on + strandat 11.395 kb on + strandat 11.395 kb on + strandat 11.395 kb on + strandat 11.396 kb on - strandat 11.396 kb on - strandat 11.396 kb on - strandat 11.396 kb on - strandat 11.396 kb on - strandat 11.434 kb on + strandat 11.434 kb on + strandat 11.435 kb on - strandat 11.448 kb on + strandat 11.448 kb on + strandat 11.449 kb on - strandat 11.449 kb on - strandat 11.449 kb on - strandat 11.449 kb on - strandat 11.449 kb on - strandat 11.464 kb on - strandat 11.464 kb on - strandat 11.675 kb on - strand, within GFF5635at 11.740 kb on + strand, within GFF5635at 11.740 kb on + strand, within GFF5635at 11.740 kb on + strand, within GFF5635at 11.740 kb on + strand, within GFF5635at 11.741 kb on - strand, within GFF5635at 11.741 kb on - strand, within GFF5635at 11.741 kb on - strand, within GFF5635at 11.741 kb on - strand, within GFF5635at 12.040 kb on + strand, within GFF5635at 12.040 kb on + strand, within GFF5635at 12.040 kb on + strand, within GFF5635at 12.040 kb on + strand, within GFF5635at 12.040 kb on + strand, within GFF5635at 12.040 kb on + strand, within GFF5635at 12.040 kb on + strand, within GFF5635at 12.040 kb on + strand, within GFF5635at 12.040 kb on + strand, within GFF5635at 12.041 kb on - strand, within GFF5635at 12.041 kb on - strand, within GFF5635at 12.041 kb on - strand, within GFF5635at 12.041 kb on - strand, within GFF5635at 12.041 kb on - strand, within GFF5635at 12.041 kb on - strand, within GFF5635at 12.041 kb on - strand, within GFF5635at 12.041 kb on - strand, within GFF5635at 12.041 kb on - strand, within GFF5635at 12.182 kb on + strandat 12.184 kb on + strandat 12.184 kb on + strandat 12.184 kb on + strandat 12.184 kb on + strandat 12.184 kb on + strandat 12.185 kb on - strandat 12.185 kb on - strandat 12.185 kb on - strandat 12.185 kb on - strandat 12.185 kb on - strandat 12.186 kb on + strandat 12.186 kb on + strandat 12.186 kb on + strandat 12.186 kb on + strandat 12.186 kb on + strandat 12.187 kb on - strandat 12.187 kb on - strandat 12.187 kb on - strandat 12.187 kb on - strandat 12.187 kb on - strandat 12.627 kb on + strand, within GFF5636at 12.628 kb on - strand, within GFF5636at 12.717 kb on + strand, within GFF5636at 12.717 kb on + strand, within GFF5636at 12.717 kb on + strand, within GFF5636at 12.717 kb on + strand, within GFF5636at 12.718 kb on - strand, within GFF5636at 12.718 kb on - strand, within GFF5636at 12.828 kb on + strand, within GFF5636at 12.828 kb on + strand, within GFF5636at 12.829 kb on - strand, within GFF5636at 12.829 kb on - strand, within GFF5636at 13.040 kb on + strand, within GFF5637at 13.040 kb on + strand, within GFF5637at 13.040 kb on + strand, within GFF5637at 13.139 kb on + strand, within GFF5637at 13.139 kb on + strand, within GFF5637at 13.139 kb on + strand, within GFF5637at 13.140 kb on - strand, within GFF5637at 13.140 kb on - strand, within GFF5637at 13.140 kb on - strand, within GFF5637at 13.140 kb on - strand, within GFF5637at 13.191 kb on - strand, within GFF5637at 13.191 kb on - strand, within GFF5637at 13.205 kb on + strand, within GFF5637at 13.205 kb on + strand, within GFF5637at 13.205 kb on + strand, within GFF5637at 13.205 kb on + strand, within GFF5637at 13.205 kb on + strand, within GFF5637at 13.205 kb on + strand, within GFF5637at 13.206 kb on - strand, within GFF5637at 13.206 kb on - strand, within GFF5637at 13.206 kb on - strand, within GFF5637at 13.206 kb on - strand, within GFF5637at 13.225 kb on + strand, within GFF5637at 13.225 kb on + strand, within GFF5637at 13.225 kb on + strand, within GFF5637at 13.225 kb on + strand, within GFF5637at 13.226 kb on - strand, within GFF5637at 13.226 kb on - strand, within GFF5637at 13.226 kb on - strand, within GFF5637at 13.580 kb on + strand, within GFF5637at 13.580 kb on + strand, within GFF5637at 13.580 kb on + strand, within GFF5637at 13.581 kb on - strand, within GFF5637at 13.581 kb on - strand, within GFF5637at 13.581 kb on - strand, within GFF5637at 13.581 kb on - strand, within GFF5637at 13.581 kb on - strand, within GFF5637at 13.741 kb on + strandat 13.749 kb on - strandat 13.756 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
11,381 + -0.0
11,381 + +1.5
11,381 + -0.7
11,381 + -1.8
11,381 + -1.3
11,381 + -0.4
11,382 - -0.4
11,382 - -0.8
11,382 - -0.8
11,382 - +0.4
11,382 - -0.5
11,382 - -0.3
11,382 - +0.3
11,382 - -0.0
11,383 + +1.3
11,393 + -0.0
11,393 + +1.1
11,393 + +0.5
11,393 + +0.1
11,393 + +0.2
11,393 + -1.7
11,393 + -0.8
11,393 + -0.2
11,393 + -0.9
11,393 + +1.0
11,394 - -0.5
11,394 - -0.9
11,395 + -0.0
11,395 + -0.6
11,395 + -0.5
11,395 + +0.2
11,395 + -1.5
11,395 + +0.9
11,395 + -0.2
11,395 + +0.1
11,396 - -0.2
11,396 - -0.1
11,396 - +0.8
11,396 - -0.5
11,396 - -0.5
11,434 + -0.2
11,434 + +0.2
11,435 - -0.2
11,448 + -0.0
11,448 + -0.4
11,449 - -0.2
11,449 - -0.2
11,449 - +1.8
11,449 - -1.3
11,449 - +0.1
11,464 - +1.8
11,464 - +2.5
11,675 - GFF5635 0.30 -1.8
11,740 + GFF5635 0.39 -0.5
11,740 + GFF5635 0.39 +0.6
11,740 + GFF5635 0.39 +0.0
11,740 + GFF5635 0.39 -0.5
11,741 - GFF5635 0.40 -0.1
11,741 - GFF5635 0.40 -0.1
11,741 - GFF5635 0.40 -0.2
11,741 - GFF5635 0.40 +0.3
12,040 + GFF5635 0.83 -0.9
12,040 + GFF5635 0.83 +0.6
12,040 + GFF5635 0.83 -0.3
12,040 + GFF5635 0.83 -1.4
12,040 + GFF5635 0.83 +0.1
12,040 + GFF5635 0.83 -0.7
12,040 + GFF5635 0.83 -0.1
12,040 + GFF5635 0.83 -0.5
12,040 + GFF5635 0.83 -1.2
12,041 - GFF5635 0.83 -0.2
12,041 - GFF5635 0.83 -0.4
12,041 - GFF5635 0.83 -0.3
12,041 - GFF5635 0.83 -0.6
12,041 - GFF5635 0.83 -0.5
12,041 - GFF5635 0.83 +0.6
12,041 - GFF5635 0.83 -1.0
12,041 - GFF5635 0.83 -0.2
12,041 - GFF5635 0.83 -0.1
12,182 + +0.5
12,184 + -0.4
12,184 + -0.2
12,184 + +0.4
12,184 + -0.6
12,184 + -2.1
12,185 - -0.4
12,185 - +0.3
12,185 - -0.0
12,185 - -0.9
12,185 - -1.0
12,186 + -2.5
12,186 + -0.9
12,186 + -0.1
12,186 + +0.4
12,186 + +0.0
12,187 - +0.5
12,187 - -0.3
12,187 - -0.5
12,187 - +0.2
12,187 - +0.4
12,627 + GFF5636 0.57 +0.3
12,628 - GFF5636 0.57 -1.8
12,717 + GFF5636 0.69 +1.4
12,717 + GFF5636 0.69 -0.9
12,717 + GFF5636 0.69 -2.4
12,717 + GFF5636 0.69 +0.4
12,718 - GFF5636 0.69 -0.4
12,718 - GFF5636 0.69 -0.8
12,828 + GFF5636 0.84 -1.5
12,828 + GFF5636 0.84 +0.1
12,829 - GFF5636 0.84 +0.6
12,829 - GFF5636 0.84 -0.7
13,040 + GFF5637 0.12 -0.2
13,040 + GFF5637 0.12 -0.2
13,040 + GFF5637 0.12 +0.6
13,139 + GFF5637 0.25 +0.1
13,139 + GFF5637 0.25 +1.0
13,139 + GFF5637 0.25 -0.9
13,140 - GFF5637 0.25 +0.7
13,140 - GFF5637 0.25 -1.5
13,140 - GFF5637 0.25 -0.6
13,140 - GFF5637 0.25 -0.8
13,191 - GFF5637 0.31 +0.5
13,191 - GFF5637 0.31 -1.7
13,205 + GFF5637 0.33 -0.7
13,205 + GFF5637 0.33 -0.9
13,205 + GFF5637 0.33 -0.3
13,205 + GFF5637 0.33 -0.9
13,205 + GFF5637 0.33 -0.2
13,205 + GFF5637 0.33 -0.7
13,206 - GFF5637 0.33 +0.0
13,206 - GFF5637 0.33 +0.8
13,206 - GFF5637 0.33 -0.3
13,206 - GFF5637 0.33 +0.1
13,225 + GFF5637 0.36 +0.1
13,225 + GFF5637 0.36 -1.3
13,225 + GFF5637 0.36 -0.4
13,225 + GFF5637 0.36 -1.6
13,226 - GFF5637 0.36 -0.2
13,226 - GFF5637 0.36 -0.2
13,226 - GFF5637 0.36 -1.7
13,580 + GFF5637 0.81 +0.4
13,580 + GFF5637 0.81 -1.1
13,580 + GFF5637 0.81 +0.8
13,581 - GFF5637 0.81 -0.7
13,581 - GFF5637 0.81 +0.8
13,581 - GFF5637 0.81 -0.8
13,581 - GFF5637 0.81 -0.2
13,581 - GFF5637 0.81 -0.3
13,741 + -0.5
13,749 - -1.9
13,756 - +0.1

Or see this region's nucleotide sequence