Strain Fitness in Variovorax sp. SCN45 around GFF5513

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
142,627	+		GFF5511	0.84	+0.3
142,627	+		GFF5511	0.84	-0.3
142,628	-		GFF5511	0.85	+0.0
142,628	-		GFF5511	0.85	-0.6
142,793	+				+0.1
142,793	+				+1.0
142,794	-				-0.6
142,831	+				-0.0
142,831	+				+1.0
142,831	+				-0.0
142,831	+				+0.4
142,831	+				-1.0
142,832	-				+2.0
142,832	-				+0.4
142,832	-				+1.0
142,832	-				+0.4
142,832	-				-1.2
142,832	-				+1.0
142,832	-				-0.0
142,956	+		GFF5512	0.27	+0.4
142,957	-		GFF5512	0.27	-1.8
143,109	+		GFF5512	0.55	-0.6
143,109	+		GFF5512	0.55	-2.0
143,109	+		GFF5512	0.55	-0.6
143,109	+		GFF5512	0.55	-1.2
143,109	+		GFF5512	0.55	-2.1
143,109	+		GFF5512	0.55	-2.4
143,109	+		GFF5512	0.55	-1.8
143,109	+		GFF5512	0.55	-0.3
143,110	-		GFF5512	0.55	+0.4
143,110	-		GFF5512	0.55	+0.4
143,459	+				-1.3
143,459	+				+1.3
143,534	+		GFF5513	0.15	-1.3
143,534	+		GFF5513	0.15	+0.4
144,107	+		GFF5513	0.63	-0.0
144,107	+		GFF5513	0.63	-1.0
144,107	+		GFF5513	0.63	-1.5
144,107	+		GFF5513	0.63	-0.7
144,107	+		GFF5513	0.63	-0.0
144,200	+		GFF5513	0.71	-1.3
144,200	+		GFF5513	0.71	-0.3
144,404	+		GFF5513	0.88	-0.8
144,404	+		GFF5513	0.88	-1.5
144,404	+		GFF5513	0.88	-0.0
144,405	-		GFF5513	0.88	-1.3