Strain Fitness in Variovorax sp. SCN45 around GFF4913

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4912 and GFF4913 are separated by 144 nucleotidesGFF4913 and GFF4914 are separated by 13 nucleotides GFF4912 - tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13), at 3,734 to 4,843 GFF4912 GFF4913 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,988 to 6,715 GFF4913 GFF4914 - Luciferase-like monooxygenase YhbW, at 6,729 to 7,727 GFF4914 Position (kb) 4 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.843 kb on + strandat 4.843 kb on + strandat 4.843 kb on + strandat 4.844 kb on - strandat 4.844 kb on - strandat 4.844 kb on - strandat 4.955 kb on + strandat 4.955 kb on + strandat 4.956 kb on - strandat 5.168 kb on + strand, within GFF4913at 5.168 kb on + strand, within GFF4913at 5.169 kb on - strand, within GFF4913at 5.169 kb on - strand, within GFF4913at 5.252 kb on + strand, within GFF4913at 5.252 kb on + strand, within GFF4913at 5.252 kb on + strand, within GFF4913at 5.252 kb on + strand, within GFF4913at 5.253 kb on - strand, within GFF4913at 5.253 kb on - strand, within GFF4913at 5.253 kb on - strand, within GFF4913at 5.274 kb on - strand, within GFF4913at 5.324 kb on + strand, within GFF4913at 5.324 kb on + strand, within GFF4913at 5.324 kb on + strand, within GFF4913at 5.325 kb on - strand, within GFF4913at 5.325 kb on - strand, within GFF4913at 5.325 kb on - strand, within GFF4913at 5.414 kb on + strand, within GFF4913at 5.415 kb on - strand, within GFF4913at 5.483 kb on + strand, within GFF4913at 5.483 kb on + strand, within GFF4913at 5.483 kb on + strand, within GFF4913at 5.483 kb on + strand, within GFF4913at 5.483 kb on + strand, within GFF4913at 5.484 kb on - strand, within GFF4913at 5.651 kb on + strand, within GFF4913at 5.651 kb on + strand, within GFF4913at 5.652 kb on - strand, within GFF4913at 5.652 kb on - strand, within GFF4913at 5.726 kb on + strand, within GFF4913at 5.726 kb on + strand, within GFF4913at 5.726 kb on + strand, within GFF4913at 5.727 kb on - strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.729 kb on + strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.730 kb on - strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.948 kb on + strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 5.949 kb on - strand, within GFF4913at 6.282 kb on - strand, within GFF4913at 6.329 kb on + strand, within GFF4913at 6.330 kb on - strand, within GFF4913at 6.371 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.377 kb on + strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.378 kb on - strand, within GFF4913at 6.419 kb on + strand, within GFF4913at 6.419 kb on + strand, within GFF4913at 6.420 kb on - strand, within GFF4913at 6.420 kb on - strand, within GFF4913at 6.429 kb on - strand, within GFF4913at 6.429 kb on - strand, within GFF4913at 6.455 kb on + strand, within GFF4913at 6.455 kb on + strand, within GFF4913at 6.455 kb on + strand, within GFF4913at 6.455 kb on + strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.456 kb on - strand, within GFF4913at 6.730 kb on + strandat 6.730 kb on + strandat 6.730 kb on + strandat 6.730 kb on + strandat 6.730 kb on + strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.731 kb on - strandat 6.775 kb on + strandat 6.775 kb on + strandat 6.775 kb on + strandat 6.776 kb on - strandat 6.776 kb on - strandat 6.776 kb on - strandat 6.952 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.088 kb on - strand, within GFF4914at 7.088 kb on - strand, within GFF4914at 7.088 kb on - strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.184 kb on - strand, within GFF4914at 7.184 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.609 kb on + strand, within GFF4914at 7.609 kb on + strand, within GFF4914at 7.610 kb on - strand, within GFF4914at 7.618 kb on + strand, within GFF4914at 7.619 kb on - strand, within GFF4914at 7.619 kb on - strand, within GFF4914at 7.701 kb on + strandat 7.701 kb on + strandat 7.702 kb on - strandat 7.702 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
4,843 + +1.3
4,843 + -0.6
4,843 + -0.9
4,844 - +1.2
4,844 - -0.7
4,844 - -1.7
4,955 + -0.4
4,955 + -0.1
4,956 - +0.3
5,168 + GFF4913 0.10 -0.8
5,168 + GFF4913 0.10 -0.4
5,169 - GFF4913 0.10 -0.0
5,169 - GFF4913 0.10 +0.3
5,252 + GFF4913 0.15 +0.6
5,252 + GFF4913 0.15 +0.4
5,252 + GFF4913 0.15 +0.3
5,252 + GFF4913 0.15 +1.0
5,253 - GFF4913 0.15 -0.5
5,253 - GFF4913 0.15 -0.4
5,253 - GFF4913 0.15 +0.4
5,274 - GFF4913 0.17 +1.1
5,324 + GFF4913 0.19 -0.3
5,324 + GFF4913 0.19 +0.6
5,324 + GFF4913 0.19 -0.4
5,325 - GFF4913 0.20 +0.1
5,325 - GFF4913 0.20 -0.1
5,325 - GFF4913 0.20 +2.0
5,414 + GFF4913 0.25 -1.6
5,415 - GFF4913 0.25 -0.0
5,483 + GFF4913 0.29 -0.6
5,483 + GFF4913 0.29 -0.9
5,483 + GFF4913 0.29 -0.4
5,483 + GFF4913 0.29 +0.2
5,483 + GFF4913 0.29 +0.2
5,484 - GFF4913 0.29 -1.0
5,651 + GFF4913 0.38 -1.1
5,651 + GFF4913 0.38 +1.0
5,652 - GFF4913 0.38 -2.7
5,652 - GFF4913 0.38 -0.5
5,726 + GFF4913 0.43 +1.0
5,726 + GFF4913 0.43 -0.6
5,726 + GFF4913 0.43 +0.8
5,727 - GFF4913 0.43 -0.3
5,729 + GFF4913 0.43 +0.1
5,729 + GFF4913 0.43 -1.0
5,729 + GFF4913 0.43 -0.4
5,729 + GFF4913 0.43 -1.0
5,729 + GFF4913 0.43 +1.1
5,729 + GFF4913 0.43 +1.0
5,729 + GFF4913 0.43 -0.1
5,729 + GFF4913 0.43 -0.1
5,730 - GFF4913 0.43 +0.0
5,730 - GFF4913 0.43 +0.6
5,730 - GFF4913 0.43 +0.2
5,730 - GFF4913 0.43 +1.0
5,730 - GFF4913 0.43 +0.3
5,730 - GFF4913 0.43 +0.0
5,730 - GFF4913 0.43 -1.0
5,948 + GFF4913 0.56 -0.2
5,948 + GFF4913 0.56 -0.5
5,948 + GFF4913 0.56 +1.6
5,948 + GFF4913 0.56 -0.4
5,948 + GFF4913 0.56 -0.0
5,948 + GFF4913 0.56 -0.2
5,948 + GFF4913 0.56 -0.7
5,948 + GFF4913 0.56 +0.6
5,948 + GFF4913 0.56 +0.5
5,948 + GFF4913 0.56 -0.4
5,948 + GFF4913 0.56 +0.6
5,948 + GFF4913 0.56 -1.3
5,948 + GFF4913 0.56 -1.0
5,949 - GFF4913 0.56 -0.2
5,949 - GFF4913 0.56 -0.4
5,949 - GFF4913 0.56 -0.1
5,949 - GFF4913 0.56 -0.4
5,949 - GFF4913 0.56 -0.7
5,949 - GFF4913 0.56 -0.3
5,949 - GFF4913 0.56 -2.1
5,949 - GFF4913 0.56 -0.4
5,949 - GFF4913 0.56 -0.2
5,949 - GFF4913 0.56 -0.9
6,282 - GFF4913 0.75 +0.3
6,329 + GFF4913 0.78 -0.7
6,330 - GFF4913 0.78 -1.0
6,371 + GFF4913 0.80 -2.1
6,377 + GFF4913 0.80 +0.1
6,377 + GFF4913 0.80 -1.0
6,377 + GFF4913 0.80 -0.2
6,377 + GFF4913 0.80 -0.6
6,377 + GFF4913 0.80 +0.5
6,377 + GFF4913 0.80 -0.6
6,377 + GFF4913 0.80 -0.2
6,377 + GFF4913 0.80 -2.0
6,377 + GFF4913 0.80 -0.2
6,377 + GFF4913 0.80 -0.7
6,378 - GFF4913 0.80 +0.5
6,378 - GFF4913 0.80 -0.7
6,378 - GFF4913 0.80 -1.5
6,378 - GFF4913 0.80 -1.0
6,378 - GFF4913 0.80 -0.0
6,378 - GFF4913 0.80 -0.9
6,378 - GFF4913 0.80 -0.7
6,378 - GFF4913 0.80 -0.2
6,378 - GFF4913 0.80 +2.0
6,378 - GFF4913 0.80 -0.2
6,378 - GFF4913 0.80 +0.4
6,378 - GFF4913 0.80 -0.0
6,419 + GFF4913 0.83 -0.2
6,419 + GFF4913 0.83 -1.1
6,420 - GFF4913 0.83 -0.8
6,420 - GFF4913 0.83 -0.5
6,429 - GFF4913 0.83 +2.4
6,429 - GFF4913 0.83 -0.2
6,455 + GFF4913 0.85 -0.4
6,455 + GFF4913 0.85 -1.1
6,455 + GFF4913 0.85 +0.3
6,455 + GFF4913 0.85 -0.1
6,456 - GFF4913 0.85 -1.8
6,456 - GFF4913 0.85 +0.3
6,456 - GFF4913 0.85 +0.2
6,456 - GFF4913 0.85 +0.6
6,456 - GFF4913 0.85 -0.4
6,730 + +0.4
6,730 + -0.2
6,730 + -0.6
6,730 + -0.4
6,730 + -0.5
6,731 - -1.7
6,731 - -0.2
6,731 - +0.2
6,731 - +0.5
6,731 - -0.4
6,731 - -0.9
6,731 - -0.7
6,731 - -0.4
6,731 - -0.2
6,775 + -0.2
6,775 + -0.3
6,775 + +0.3
6,776 - -0.5
6,776 - -0.7
6,776 - -0.4
6,952 + GFF4914 0.22 -0.6
7,087 + GFF4914 0.36 -0.9
7,087 + GFF4914 0.36 -0.2
7,087 + GFF4914 0.36 -0.6
7,087 + GFF4914 0.36 -0.0
7,087 + GFF4914 0.36 +0.1
7,087 + GFF4914 0.36 +0.5
7,088 - GFF4914 0.36 -0.5
7,088 - GFF4914 0.36 +0.1
7,088 - GFF4914 0.36 +0.1
7,129 + GFF4914 0.40 +0.4
7,129 + GFF4914 0.40 +0.1
7,129 + GFF4914 0.40 -0.4
7,129 + GFF4914 0.40 -0.6
7,129 + GFF4914 0.40 -0.4
7,129 + GFF4914 0.40 -0.2
7,183 + GFF4914 0.45 -0.5
7,183 + GFF4914 0.45 -1.1
7,183 + GFF4914 0.45 +1.0
7,183 + GFF4914 0.45 -0.5
7,183 + GFF4914 0.45 +0.4
7,184 - GFF4914 0.46 +1.1
7,184 - GFF4914 0.46 -1.0
7,436 - GFF4914 0.71 +0.8
7,436 - GFF4914 0.71 -0.2
7,436 - GFF4914 0.71 +0.3
7,436 - GFF4914 0.71 -2.4
7,609 + GFF4914 0.88 -0.7
7,609 + GFF4914 0.88 -0.0
7,610 - GFF4914 0.88 -0.5
7,618 + GFF4914 0.89 -0.9
7,619 - GFF4914 0.89 +0.1
7,619 - GFF4914 0.89 +0.2
7,701 + +0.5
7,701 + -0.2
7,702 - +1.0
7,702 - -0.4

Or see this region's nucleotide sequence