Strain Fitness in Variovorax sp. SCN45 around GFF4829

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4826 and GFF4827 are separated by 71 nucleotidesGFF4827 and GFF4828 are separated by 7 nucleotidesGFF4828 and GFF4829 are separated by 73 nucleotidesGFF4829 and GFF4830 are separated by 96 nucleotides GFF4826 - Permease of the drug/metabolite transporter (DMT) superfamily, at 197,123 to 198,013 GFF4826 GFF4827 - FIG00348957: hypothetical protein, at 198,085 to 198,501 GFF4827 GFF4828 - no description, at 198,509 to 198,634 GFF4828 GFF4829 - Isocitrate lyase (EC 4.1.3.1), at 198,708 to 200,039 GFF4829 GFF4830 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 200,136 to 201,098 GFF4830 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -2 -1 0 1 2at 197.833 kb on + strand, within GFF4826at 197.833 kb on + strand, within GFF4826at 197.967 kb on + strandat 197.968 kb on - strandat 198.006 kb on + strandat 198.007 kb on - strandat 198.007 kb on - strandat 198.007 kb on - strandat 198.007 kb on - strandat 198.047 kb on + strandat 198.047 kb on + strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.063 kb on + strandat 198.063 kb on + strandat 198.064 kb on - strandat 198.064 kb on - strandat 198.107 kb on - strandat 198.199 kb on + strand, within GFF4827at 198.214 kb on + strand, within GFF4827at 198.214 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.263 kb on - strand, within GFF4827at 198.263 kb on - strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.392 kb on - strand, within GFF4827at 198.507 kb on + strandat 198.508 kb on - strandat 198.551 kb on + strand, within GFF4828at 198.588 kb on + strand, within GFF4828at 198.589 kb on - strand, within GFF4828at 198.625 kb on + strandat 198.635 kb on - strandat 198.653 kb on + strandat 198.653 kb on + strandat 198.654 kb on - strandat 198.658 kb on + strandat 198.658 kb on + strandat 198.658 kb on + strandat 198.658 kb on + strandat 198.924 kb on + strand, within GFF4829at 198.924 kb on + strand, within GFF4829at 198.924 kb on + strand, within GFF4829at 198.925 kb on - strand, within GFF4829at 198.925 kb on - strand, within GFF4829at 198.925 kb on - strand, within GFF4829at 198.996 kb on + strand, within GFF4829at 198.996 kb on + strand, within GFF4829at 198.996 kb on + strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 199.047 kb on + strand, within GFF4829at 199.048 kb on - strand, within GFF4829at 199.065 kb on + strand, within GFF4829at 199.065 kb on + strand, within GFF4829at 199.066 kb on - strand, within GFF4829at 199.066 kb on - strand, within GFF4829at 199.066 kb on - strand, within GFF4829at 199.071 kb on + strand, within GFF4829at 199.071 kb on + strand, within GFF4829at 199.072 kb on - strand, within GFF4829at 199.072 kb on - strand, within GFF4829at 199.072 kb on - strand, within GFF4829at 199.072 kb on - strand, within GFF4829at 199.180 kb on - strand, within GFF4829at 199.180 kb on - strand, within GFF4829at 199.180 kb on - strand, within GFF4829at 199.180 kb on - strand, within GFF4829at 199.518 kb on + strand, within GFF4829at 199.519 kb on - strand, within GFF4829at 199.519 kb on - strand, within GFF4829at 199.566 kb on + strand, within GFF4829at 199.567 kb on - strand, within GFF4829at 199.677 kb on + strand, within GFF4829at 199.678 kb on - strand, within GFF4829at 199.764 kb on + strand, within GFF4829at 199.764 kb on + strand, within GFF4829at 199.765 kb on - strand, within GFF4829at 199.765 kb on - strand, within GFF4829at 199.770 kb on + strand, within GFF4829at 199.770 kb on + strand, within GFF4829at 199.770 kb on + strand, within GFF4829at 199.770 kb on + strand, within GFF4829at 199.770 kb on + strand, within GFF4829at 199.770 kb on + strand, within GFF4829at 199.770 kb on + strand, within GFF4829at 199.770 kb on + strand, within GFF4829at 199.771 kb on - strand, within GFF4829at 199.771 kb on - strand, within GFF4829at 199.771 kb on - strand, within GFF4829at 199.771 kb on - strand, within GFF4829at 199.771 kb on - strand, within GFF4829at 199.771 kb on - strand, within GFF4829at 199.837 kb on - strand, within GFF4829at 199.863 kb on + strand, within GFF4829at 199.863 kb on + strand, within GFF4829at 199.863 kb on + strand, within GFF4829at 199.863 kb on + strand, within GFF4829at 199.864 kb on - strand, within GFF4829at 199.864 kb on - strand, within GFF4829at 199.864 kb on - strand, within GFF4829at 199.864 kb on - strand, within GFF4829at 199.864 kb on - strand, within GFF4829at 199.864 kb on - strand, within GFF4829at 199.864 kb on - strand, within GFF4829at 199.911 kb on + strandat 199.911 kb on + strandat 199.911 kb on + strandat 199.912 kb on - strandat 199.912 kb on - strandat 199.951 kb on - strandat 200.066 kb on + strandat 200.066 kb on + strandat 200.066 kb on + strandat 200.067 kb on - strandat 200.078 kb on + strandat 200.079 kb on - strandat 200.079 kb on - strandat 200.079 kb on - strandat 200.215 kb on + strandat 200.302 kb on + strand, within GFF4830at 200.302 kb on + strand, within GFF4830at 200.302 kb on + strand, within GFF4830at 200.393 kb on - strand, within GFF4830at 200.479 kb on + strand, within GFF4830at 200.480 kb on - strand, within GFF4830at 200.480 kb on - strand, within GFF4830at 200.515 kb on + strand, within GFF4830at 200.659 kb on + strand, within GFF4830at 201.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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197,833 + GFF4826 0.80 +0.8
197,833 + GFF4826 0.80 -0.7
197,967 + -2.0
197,968 - +0.3
198,006 + -0.5
198,007 - -0.3
198,007 - -1.3
198,007 - -0.2
198,007 - -0.3
198,047 + -0.1
198,047 + -0.5
198,048 - +0.2
198,048 - -0.8
198,048 - -0.5
198,048 - -1.0
198,048 - -1.3
198,048 - -0.5
198,048 - +0.5
198,063 + -0.6
198,063 + -0.7
198,064 - +0.6
198,064 - +0.2
198,107 - +0.5
198,199 + GFF4827 0.27 +0.1
198,214 + GFF4827 0.31 -1.0
198,214 + GFF4827 0.31 +0.4
198,262 + GFF4827 0.42 +0.9
198,262 + GFF4827 0.42 -0.2
198,262 + GFF4827 0.42 +0.8
198,262 + GFF4827 0.42 -0.3
198,262 + GFF4827 0.42 +0.2
198,262 + GFF4827 0.42 -0.4
198,262 + GFF4827 0.42 -0.3
198,263 - GFF4827 0.43 +0.1
198,263 - GFF4827 0.43 -0.6
198,334 + GFF4827 0.60 -0.2
198,334 + GFF4827 0.60 +0.3
198,334 + GFF4827 0.60 -0.8
198,334 + GFF4827 0.60 +0.7
198,334 + GFF4827 0.60 -0.2
198,334 + GFF4827 0.60 -0.0
198,335 - GFF4827 0.60 -2.0
198,335 - GFF4827 0.60 -1.1
198,335 - GFF4827 0.60 -0.3
198,335 - GFF4827 0.60 -0.8
198,335 - GFF4827 0.60 -1.1
198,335 - GFF4827 0.60 -2.2
198,335 - GFF4827 0.60 +0.4
198,392 - GFF4827 0.74 +1.1
198,507 + -0.0
198,508 - -0.0
198,551 + GFF4828 0.33 -0.9
198,588 + GFF4828 0.63 -0.4
198,589 - GFF4828 0.63 -1.0
198,625 + -0.4
198,635 - -1.0
198,653 + -0.0
198,653 + -0.1
198,654 - +0.9
198,658 + -1.2
198,658 + +0.2
198,658 + +1.3
198,658 + -0.8
198,924 + GFF4829 0.16 +0.4
198,924 + GFF4829 0.16 -0.5
198,924 + GFF4829 0.16 +0.1
198,925 - GFF4829 0.16 -1.5
198,925 - GFF4829 0.16 -0.8
198,925 - GFF4829 0.16 -1.6
198,996 + GFF4829 0.22 +1.0
198,996 + GFF4829 0.22 -1.5
198,996 + GFF4829 0.22 -0.4
198,997 - GFF4829 0.22 +0.3
198,997 - GFF4829 0.22 +1.6
198,997 - GFF4829 0.22 +0.2
198,997 - GFF4829 0.22 -0.3
198,997 - GFF4829 0.22 -0.2
198,997 - GFF4829 0.22 -1.3
199,047 + GFF4829 0.25 -0.9
199,048 - GFF4829 0.26 +0.1
199,065 + GFF4829 0.27 +0.7
199,065 + GFF4829 0.27 +0.1
199,066 - GFF4829 0.27 -1.0
199,066 - GFF4829 0.27 +0.9
199,066 - GFF4829 0.27 -0.9
199,071 + GFF4829 0.27 -1.0
199,071 + GFF4829 0.27 +0.0
199,072 - GFF4829 0.27 -0.7
199,072 - GFF4829 0.27 +0.2
199,072 - GFF4829 0.27 -0.7
199,072 - GFF4829 0.27 -0.9
199,180 - GFF4829 0.35 -1.9
199,180 - GFF4829 0.35 -1.1
199,180 - GFF4829 0.35 -0.3
199,180 - GFF4829 0.35 -0.5
199,518 + GFF4829 0.61 +0.5
199,519 - GFF4829 0.61 -0.6
199,519 - GFF4829 0.61 -2.2
199,566 + GFF4829 0.64 +0.2
199,567 - GFF4829 0.64 +1.0
199,677 + GFF4829 0.73 -1.0
199,678 - GFF4829 0.73 +0.0
199,764 + GFF4829 0.79 +0.5
199,764 + GFF4829 0.79 -1.3
199,765 - GFF4829 0.79 -0.7
199,765 - GFF4829 0.79 -0.5
199,770 + GFF4829 0.80 -0.8
199,770 + GFF4829 0.80 -0.2
199,770 + GFF4829 0.80 -0.1
199,770 + GFF4829 0.80 -0.3
199,770 + GFF4829 0.80 +2.0
199,770 + GFF4829 0.80 +0.5
199,770 + GFF4829 0.80 -0.7
199,770 + GFF4829 0.80 -0.9
199,771 - GFF4829 0.80 +0.3
199,771 - GFF4829 0.80 -0.4
199,771 - GFF4829 0.80 +0.9
199,771 - GFF4829 0.80 -1.5
199,771 - GFF4829 0.80 -0.5
199,771 - GFF4829 0.80 +0.5
199,837 - GFF4829 0.85 +0.0
199,863 + GFF4829 0.87 -0.5
199,863 + GFF4829 0.87 -0.8
199,863 + GFF4829 0.87 -0.3
199,863 + GFF4829 0.87 -0.2
199,864 - GFF4829 0.87 -0.0
199,864 - GFF4829 0.87 -0.3
199,864 - GFF4829 0.87 -0.9
199,864 - GFF4829 0.87 -2.1
199,864 - GFF4829 0.87 -0.4
199,864 - GFF4829 0.87 -1.7
199,864 - GFF4829 0.87 -0.2
199,911 + +0.9
199,911 + +0.2
199,911 + +0.0
199,912 - -0.3
199,912 - -0.6
199,951 - -1.3
200,066 + +0.0
200,066 + -0.8
200,066 + +0.6
200,067 - +0.2
200,078 + -0.5
200,079 - -0.1
200,079 - +0.0
200,079 - -0.2
200,215 + +0.1
200,302 + GFF4830 0.17 +0.3
200,302 + GFF4830 0.17 -1.1
200,302 + GFF4830 0.17 -0.4
200,393 - GFF4830 0.27 +1.5
200,479 + GFF4830 0.36 -0.4
200,480 - GFF4830 0.36 -0.1
200,480 - GFF4830 0.36 -0.6
200,515 + GFF4830 0.39 +0.0
200,659 + GFF4830 0.54 +0.8
201,026 + -0.9

Or see this region's nucleotide sequence