Strain Fitness in Variovorax sp. SCN45 around GFF4728

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
90,198	+				-1.0
90,199	-				-0.3
90,199	-				-0.7
90,199	-				-0.7
90,445	+				-1.3
90,445	+				-0.5
90,446	-				-0.1
90,544	+				-0.2
90,545	-				-0.4
90,601	+		GFF4727	0.13	-0.1
90,602	-		GFF4727	0.14	-1.2
90,850	+		GFF4727	0.53	-1.3
90,901	+		GFF4727	0.61	+0.0
90,901	+		GFF4727	0.61	+0.3
90,901	+		GFF4727	0.61	-0.3
90,902	-		GFF4727	0.61	+0.7
90,902	-		GFF4727	0.61	+0.2
90,902	-		GFF4727	0.61	-0.5
90,902	-		GFF4727	0.61	+0.4
90,902	-		GFF4727	0.61	-1.0
90,916	+		GFF4727	0.63	-0.9
91,249	-				+0.3
91,664	+		GFF4728	0.48	-0.6
91,758	+		GFF4728	0.56	-0.1
91,850	+		GFF4728	0.65	-0.1
91,850	+		GFF4728	0.65	+0.2
91,851	-		GFF4728	0.65	+0.1
91,851	-		GFF4728	0.65	+0.9
92,010	+		GFF4728	0.79	-1.7
92,011	-		GFF4728	0.79	-1.2
92,034	+		GFF4728	0.82	-1.1
92,034	+		GFF4728	0.82	+0.3
92,035	-		GFF4728	0.82	+0.7
92,035	-		GFF4728	0.82	+0.0
92,037	+		GFF4728	0.82	-0.0
92,037	+		GFF4728	0.82	-0.3
92,038	-		GFF4728	0.82	+0.3
92,122	-		GFF4728	0.90	+1.8
92,122	-		GFF4728	0.90	+0.3
92,148	+				-0.2
92,148	+				-0.1
92,148	+				-0.5
92,148	+				-0.6
92,148	+				-0.1
92,148	+				-1.1
92,148	+				-0.1
92,148	+				-0.7
92,148	+				-0.4
92,148	+				+0.1
92,149	-				+0.3
92,149	-				-1.3
92,149	-				-1.3
92,149	-				-0.5
92,149	-				-0.7
92,149	-				-0.3
92,149	-				-0.5
92,149	-				-0.5
92,149	-				-0.3
92,149	-				-1.3
92,149	-				-0.4
92,149	-				-0.5
92,149	-				+1.5
92,293	+				+0.2
92,294	-				-1.9
92,346	+		GFF4729	0.38	+1.9
92,347	-		GFF4729	0.38	+0.6
92,347	-		GFF4729	0.38	-0.1
92,347	-		GFF4729	0.38	-2.9
92,373	-		GFF4729	0.56	-0.5
92,383	+		GFF4729	0.63	+1.5
92,383	+		GFF4729	0.63	-0.2
92,402	+		GFF4729	0.76	+0.9
92,402	+		GFF4729	0.76	-0.1
92,402	+		GFF4729	0.76	-0.1
92,402	+		GFF4729	0.76	-0.1
92,403	-		GFF4729	0.77	-1.2
92,403	-		GFF4729	0.77	-0.4
92,403	-		GFF4729	0.77	+0.4
92,403	-		GFF4729	0.77	-0.4
93,006	+		GFF4730	0.25	-1.2
93,007	-		GFF4730	0.25	-1.3
93,007	-		GFF4730	0.25	+0.7