Strain Fitness in Variovorax sp. SCN45 around GFF4698

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4697 and GFF4698 are separated by 59 nucleotidesGFF4698 and GFF4699 are separated by 189 nucleotides GFF4697 - TldE protein, part of TldE/TldD proteolytic complex, at 60,152 to 61,522 GFF4697 GFF4698 - Transcriptional regulator of various polyols utilization, AraC family, at 61,582 to 62,532 GFF4698 GFF4699 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 62,722 to 64,008 GFF4699 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 60.701 kb on + strand, within GFF4697at 60.776 kb on + strand, within GFF4697at 60.776 kb on + strand, within GFF4697at 60.777 kb on - strand, within GFF4697at 60.777 kb on - strand, within GFF4697at 60.830 kb on + strand, within GFF4697at 60.965 kb on + strand, within GFF4697at 60.966 kb on - strand, within GFF4697at 60.966 kb on - strand, within GFF4697at 61.136 kb on + strand, within GFF4697at 61.136 kb on + strand, within GFF4697at 61.137 kb on - strand, within GFF4697at 61.137 kb on - strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.152 kb on - strand, within GFF4697at 61.152 kb on - strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.317 kb on - strand, within GFF4697at 61.317 kb on - strand, within GFF4697at 61.317 kb on - strand, within GFF4697at 61.332 kb on - strand, within GFF4697at 61.332 kb on - strand, within GFF4697at 61.332 kb on - strand, within GFF4697at 61.457 kb on + strandat 61.457 kb on + strandat 61.457 kb on + strandat 61.457 kb on + strandat 61.457 kb on + strandat 61.458 kb on - strandat 61.458 kb on - strandat 61.458 kb on - strandat 61.720 kb on + strand, within GFF4698at 61.721 kb on - strand, within GFF4698at 61.732 kb on + strand, within GFF4698at 61.733 kb on - strand, within GFF4698at 61.807 kb on + strand, within GFF4698at 61.807 kb on + strand, within GFF4698at 61.807 kb on + strand, within GFF4698at 61.808 kb on - strand, within GFF4698at 62.188 kb on + strand, within GFF4698at 62.188 kb on + strand, within GFF4698at 62.189 kb on - strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.384 kb on - strand, within GFF4698at 62.384 kb on - strand, within GFF4698at 62.459 kb on - strandat 62.459 kb on - strandat 62.464 kb on + strandat 62.465 kb on - strandat 62.605 kb on + strandat 62.605 kb on + strandat 62.605 kb on + strandat 62.652 kb on + strandat 62.652 kb on + strandat 62.730 kb on + strandat 62.878 kb on + strand, within GFF4699at 62.878 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.987 kb on - strand, within GFF4699at 62.987 kb on - strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.998 kb on + strand, within GFF4699at 62.998 kb on + strand, within GFF4699at 62.998 kb on + strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.065 kb on - strand, within GFF4699at 63.077 kb on - strand, within GFF4699at 63.077 kb on - strand, within GFF4699at 63.077 kb on - strand, within GFF4699at 63.077 kb on - strand, within GFF4699at 63.082 kb on + strand, within GFF4699at 63.083 kb on - strand, within GFF4699at 63.083 kb on - strand, within GFF4699at 63.083 kb on - strand, within GFF4699at 63.083 kb on - strand, within GFF4699at 63.219 kb on + strand, within GFF4699at 63.219 kb on + strand, within GFF4699at 63.219 kb on + strand, within GFF4699at 63.421 kb on + strand, within GFF4699at 63.421 kb on + strand, within GFF4699at 63.421 kb on + strand, within GFF4699at 63.422 kb on - strand, within GFF4699at 63.422 kb on - strand, within GFF4699at 63.422 kb on - strand, within GFF4699at 63.422 kb on - strand, within GFF4699at 63.440 kb on - strand, within GFF4699at 63.440 kb on - strand, within GFF4699

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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60,701 + GFF4697 0.40 -0.1
60,776 + GFF4697 0.46 +0.1
60,776 + GFF4697 0.46 +0.5
60,777 - GFF4697 0.46 -1.0
60,777 - GFF4697 0.46 -0.3
60,830 + GFF4697 0.49 +0.5
60,965 + GFF4697 0.59 -0.3
60,966 - GFF4697 0.59 +0.9
60,966 - GFF4697 0.59 +0.0
61,136 + GFF4697 0.72 -0.7
61,136 + GFF4697 0.72 -0.5
61,137 - GFF4697 0.72 +1.5
61,137 - GFF4697 0.72 +1.2
61,151 + GFF4697 0.73 -0.4
61,151 + GFF4697 0.73 -0.4
61,151 + GFF4697 0.73 +0.1
61,151 + GFF4697 0.73 -0.5
61,151 + GFF4697 0.73 -0.2
61,151 + GFF4697 0.73 -0.6
61,152 - GFF4697 0.73 +0.9
61,152 - GFF4697 0.73 -0.1
61,316 + GFF4697 0.85 +2.2
61,316 + GFF4697 0.85 -0.3
61,316 + GFF4697 0.85 +0.6
61,316 + GFF4697 0.85 +0.2
61,316 + GFF4697 0.85 +1.7
61,316 + GFF4697 0.85 -0.7
61,317 - GFF4697 0.85 +0.7
61,317 - GFF4697 0.85 +0.1
61,317 - GFF4697 0.85 +0.8
61,332 - GFF4697 0.86 -0.1
61,332 - GFF4697 0.86 -0.4
61,332 - GFF4697 0.86 -1.7
61,457 + +0.0
61,457 + -0.1
61,457 + -0.5
61,457 + +0.5
61,457 + +0.3
61,458 - -0.5
61,458 - +0.0
61,458 - +0.9
61,720 + GFF4698 0.15 -0.1
61,721 - GFF4698 0.15 -0.5
61,732 + GFF4698 0.16 +0.9
61,733 - GFF4698 0.16 -0.3
61,807 + GFF4698 0.24 +0.5
61,807 + GFF4698 0.24 -2.0
61,807 + GFF4698 0.24 +0.4
61,808 - GFF4698 0.24 -1.3
62,188 + GFF4698 0.64 -0.8
62,188 + GFF4698 0.64 +0.5
62,189 - GFF4698 0.64 -0.5
62,383 + GFF4698 0.84 -1.1
62,383 + GFF4698 0.84 +0.1
62,383 + GFF4698 0.84 +0.2
62,383 + GFF4698 0.84 -1.0
62,383 + GFF4698 0.84 -0.5
62,383 + GFF4698 0.84 -0.2
62,383 + GFF4698 0.84 -0.5
62,384 - GFF4698 0.84 -0.8
62,384 - GFF4698 0.84 -0.1
62,459 - -1.1
62,459 - -0.3
62,464 + -1.3
62,465 - -0.2
62,605 + -0.3
62,605 + -0.1
62,605 + +0.5
62,652 + +0.2
62,652 + +0.0
62,730 + +0.2
62,878 + GFF4699 0.12 +1.7
62,878 + GFF4699 0.12 -0.2
62,986 + GFF4699 0.21 -0.7
62,986 + GFF4699 0.21 +0.5
62,986 + GFF4699 0.21 -1.1
62,986 + GFF4699 0.21 -0.8
62,986 + GFF4699 0.21 -0.1
62,986 + GFF4699 0.21 -0.9
62,987 - GFF4699 0.21 -0.3
62,987 - GFF4699 0.21 -1.3
62,995 + GFF4699 0.21 -0.7
62,995 + GFF4699 0.21 -0.2
62,995 + GFF4699 0.21 +0.1
62,995 + GFF4699 0.21 -0.1
62,995 + GFF4699 0.21 -0.4
62,995 + GFF4699 0.21 +0.3
62,995 + GFF4699 0.21 -1.1
62,995 + GFF4699 0.21 -0.7
62,995 + GFF4699 0.21 +1.3
62,995 + GFF4699 0.21 -0.9
62,996 - GFF4699 0.21 -0.5
62,996 - GFF4699 0.21 +0.5
62,996 - GFF4699 0.21 -0.5
62,996 - GFF4699 0.21 -0.7
62,996 - GFF4699 0.21 -0.3
62,996 - GFF4699 0.21 +0.7
62,996 - GFF4699 0.21 +0.5
62,998 + GFF4699 0.21 -0.3
62,998 + GFF4699 0.21 +1.5
62,998 + GFF4699 0.21 -0.7
62,999 - GFF4699 0.22 -0.3
62,999 - GFF4699 0.22 +0.4
62,999 - GFF4699 0.22 -0.2
62,999 - GFF4699 0.22 +0.1
62,999 - GFF4699 0.22 -1.3
63,061 + GFF4699 0.26 -0.9
63,061 + GFF4699 0.26 -1.2
63,061 + GFF4699 0.26 +0.1
63,061 + GFF4699 0.26 +0.6
63,061 + GFF4699 0.26 +1.0
63,062 - GFF4699 0.26 +0.4
63,062 - GFF4699 0.26 -0.2
63,062 - GFF4699 0.26 +0.7
63,062 - GFF4699 0.26 -0.1
63,062 - GFF4699 0.26 +1.0
63,065 - GFF4699 0.27 +3.8
63,077 - GFF4699 0.28 +0.2
63,077 - GFF4699 0.28 +0.3
63,077 - GFF4699 0.28 +1.5
63,077 - GFF4699 0.28 -0.2
63,082 + GFF4699 0.28 -0.2
63,083 - GFF4699 0.28 -1.2
63,083 - GFF4699 0.28 -1.2
63,083 - GFF4699 0.28 -0.9
63,083 - GFF4699 0.28 +0.5
63,219 + GFF4699 0.39 -0.5
63,219 + GFF4699 0.39 -0.6
63,219 + GFF4699 0.39 +0.4
63,421 + GFF4699 0.54 -0.7
63,421 + GFF4699 0.54 +0.5
63,421 + GFF4699 0.54 -0.1
63,422 - GFF4699 0.54 +0.0
63,422 - GFF4699 0.54 -0.3
63,422 - GFF4699 0.54 -1.9
63,422 - GFF4699 0.54 -0.1
63,440 - GFF4699 0.56 +0.1
63,440 - GFF4699 0.56 -0.0

Or see this region's nucleotide sequence