Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4559 and GFF4560 are separated by 97 nucleotides GFF4560 and GFF4561 are separated by 108 nucleotides GFF4561 and GFF4562 are separated by 5 nucleotides
GFF4559 - Uncharacterized membrane protein Rmet_3714, at 195,197 to 195,406
GFF4559
GFF4560 - hypothetical protein, at 195,504 to 196,235
GFF4560
GFF4561 - Domain often clustered or fused with uracil-DNA glycosylase / Uracil-DNA glycosylase, putative family 6 (EC 3.2.2.27), at 196,344 to 197,867
GFF4561
GFF4562 - Biotin synthase related domain containing protein, at 197,873 to 199,126
GFF4562
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.701 kb on - strand, within GFF4560 at 196.130 kb on - strand, within GFF4560 at 196.256 kb on - strand at 196.285 kb on + strand at 196.286 kb on - strand at 196.286 kb on - strand at 196.325 kb on + strand at 196.325 kb on + strand at 196.326 kb on - strand at 196.326 kb on - strand at 196.341 kb on + strand at 196.341 kb on + strand at 196.341 kb on + strand at 196.342 kb on - strand at 196.342 kb on - strand at 196.342 kb on - strand at 196.359 kb on + strand at 196.359 kb on + strand at 196.360 kb on - strand at 196.360 kb on - strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.469 kb on - strand at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.774 kb on + strand, within GFF4561 at 196.774 kb on + strand, within GFF4561 at 196.775 kb on - strand, within GFF4561 at 196.775 kb on - strand, within GFF4561 at 196.775 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.158 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.557 kb on - strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 198.219 kb on + strand, within GFF4562 at 198.219 kb on + strand, within GFF4562 at 198.219 kb on + strand, within GFF4562 at 198.219 kb on + strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.246 kb on + strand, within GFF4562 at 198.247 kb on - strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.348 kb on + strand, within GFF4562 at 198.349 kb on - strand, within GFF4562 at 198.349 kb on - strand, within GFF4562 at 198.357 kb on + strand, within GFF4562 at 198.358 kb on - strand, within GFF4562 at 198.358 kb on - strand, within GFF4562 at 198.648 kb on + strand, within GFF4562 at 198.708 kb on + strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.831 kb on + strand, within GFF4562
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 195,399 + +0.2 195,399 + -0.1 195,399 + -1.0 195,399 + -0.9 195,399 + -1.1 195,399 + +0.7 195,399 + -0.5 195,399 + -0.0 195,399 + +0.1 195,399 + -1.3 195,399 + -1.5 195,399 + +1.5 195,399 + -0.2 195,399 + +0.0 195,399 + -1.7 195,400 - -0.1 195,400 - -0.9 195,400 - +0.4 195,400 - -0.5 195,505 + +0.4 195,505 + -0.5 195,505 + -0.6 195,505 + -0.6 195,505 + +0.2 195,506 - -0.6 195,506 - +0.3 195,506 - -0.9 195,506 - +1.0 195,506 - +0.9 195,506 - -0.3 195,701 - GFF4560 0.27 -0.0 196,130 - GFF4560 0.86 -2.8 196,256 - +2.4 196,285 + +0.3 196,286 - +0.3 196,286 - +0.3 196,325 + +0.9 196,325 + -0.2 196,326 - +0.0 196,326 - +0.2 196,341 + +0.0 196,341 + -0.4 196,341 + -0.3 196,342 - -0.0 196,342 - -0.5 196,342 - +0.0 196,359 + +0.3 196,359 + +1.3 196,360 - +0.0 196,360 - +0.0 196,383 + +0.4 196,383 + -0.6 196,383 + +0.3 196,383 + -0.1 196,383 + -0.0 196,383 + -0.2 196,383 + +0.2 196,384 - +0.8 196,384 - -0.3 196,384 - -0.1 196,384 - +0.9 196,384 - -0.5 196,384 - -0.4 196,469 - +0.8 196,744 + GFF4561 0.26 -0.4 196,744 + GFF4561 0.26 +1.1 196,744 + GFF4561 0.26 -0.3 196,744 + GFF4561 0.26 -0.2 196,744 + GFF4561 0.26 -1.4 196,745 - GFF4561 0.26 +2.9 196,745 - GFF4561 0.26 -1.1 196,745 - GFF4561 0.26 +0.9 196,745 - GFF4561 0.26 -0.4 196,745 - GFF4561 0.26 -0.5 196,745 - GFF4561 0.26 -1.8 196,774 + GFF4561 0.28 +0.0 196,774 + GFF4561 0.28 -0.4 196,775 - GFF4561 0.28 -1.3 196,775 - GFF4561 0.28 -0.2 196,775 - GFF4561 0.28 -0.1 197,053 - GFF4561 0.47 -0.1 197,053 - GFF4561 0.47 +0.1 197,053 - GFF4561 0.47 -0.5 197,158 + GFF4561 0.53 -0.4 197,224 + GFF4561 0.58 -0.2 197,224 + GFF4561 0.58 +0.5 197,224 + GFF4561 0.58 -0.1 197,224 + GFF4561 0.58 -1.5 197,224 + GFF4561 0.58 -0.4 197,225 - GFF4561 0.58 -0.1 197,225 - GFF4561 0.58 -2.3 197,227 + GFF4561 0.58 -0.2 197,227 + GFF4561 0.58 -0.8 197,227 + GFF4561 0.58 +0.3 197,227 + GFF4561 0.58 +0.1 197,227 + GFF4561 0.58 -1.3 197,228 - GFF4561 0.58 -0.5 197,228 - GFF4561 0.58 +0.7 197,228 - GFF4561 0.58 -0.7 197,228 - GFF4561 0.58 +2.9 197,557 - GFF4561 0.80 +0.1 197,593 + GFF4561 0.82 -0.4 197,593 + GFF4561 0.82 -0.2 197,593 + GFF4561 0.82 -0.4 197,593 + GFF4561 0.82 -1.3 197,593 + GFF4561 0.82 -0.3 197,593 + GFF4561 0.82 +0.7 197,594 - GFF4561 0.82 -1.0 197,594 - GFF4561 0.82 +0.5 197,594 - GFF4561 0.82 -0.1 197,594 - GFF4561 0.82 -0.9 197,594 - GFF4561 0.82 -0.2 198,219 + GFF4562 0.28 -0.6 198,219 + GFF4562 0.28 -1.1 198,219 + GFF4562 0.28 +0.0 198,219 + GFF4562 0.28 +1.3 198,220 - GFF4562 0.28 -0.9 198,220 - GFF4562 0.28 -0.3 198,220 - GFF4562 0.28 +0.5 198,220 - GFF4562 0.28 +1.1 198,246 + GFF4562 0.30 -1.1 198,247 - GFF4562 0.30 +0.1 198,327 + GFF4562 0.36 -0.2 198,327 + GFF4562 0.36 -0.4 198,327 + GFF4562 0.36 -1.5 198,327 + GFF4562 0.36 -0.7 198,327 + GFF4562 0.36 -0.5 198,327 + GFF4562 0.36 -0.8 198,327 + GFF4562 0.36 -0.4 198,328 - GFF4562 0.36 +1.2 198,328 - GFF4562 0.36 +0.2 198,328 - GFF4562 0.36 -0.8 198,328 - GFF4562 0.36 +0.4 198,330 + GFF4562 0.36 -0.1 198,330 + GFF4562 0.36 -0.1 198,330 + GFF4562 0.36 -1.1 198,330 + GFF4562 0.36 +0.3 198,330 + GFF4562 0.36 -0.7 198,330 + GFF4562 0.36 -0.5 198,330 + GFF4562 0.36 +0.5 198,330 + GFF4562 0.36 -0.0 198,330 + GFF4562 0.36 +0.9 198,330 + GFF4562 0.36 +1.9 198,330 + GFF4562 0.36 -0.4 198,331 - GFF4562 0.37 -0.0 198,331 - GFF4562 0.37 +0.2 198,331 - GFF4562 0.37 -1.1 198,331 - GFF4562 0.37 +0.1 198,331 - GFF4562 0.37 +0.7 198,331 - GFF4562 0.37 -2.1 198,348 + GFF4562 0.38 -1.0 198,349 - GFF4562 0.38 -1.0 198,349 - GFF4562 0.38 +0.8 198,357 + GFF4562 0.39 -0.5 198,358 - GFF4562 0.39 -0.9 198,358 - GFF4562 0.39 +1.1 198,648 + GFF4562 0.62 -1.4 198,708 + GFF4562 0.67 +0.2 198,709 - GFF4562 0.67 -1.4 198,709 - GFF4562 0.67 +1.3 198,709 - GFF4562 0.67 -0.5 198,709 - GFF4562 0.67 -0.9 198,709 - GFF4562 0.67 -1.2 198,709 - GFF4562 0.67 +0.8 198,709 - GFF4562 0.67 -1.0 198,831 + GFF4562 0.76 +0.6
Or see this region's nucleotide sequence