Strain Fitness in Variovorax sp. SCN45 around GFF435

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF433 and GFF434 are separated by 8 nucleotidesGFF434 and GFF435 are separated by 25 nucleotidesGFF435 and GFF436 are separated by 46 nucleotidesGFF436 and GFF437 are separated by 193 nucleotides GFF433 - Flagellar brake protein YcgR, at 472,011 to 472,766 GFF433 GFF434 - OsmC/Ohr family protein, at 472,775 to 473,239 GFF434 GFF435 - hypothetical protein, at 473,265 to 473,816 GFF435 GFF436 - LrgA-associated membrane protein LrgB, at 473,863 to 474,594 GFF436 GFF437 - Antiholin-like protein LrgA, at 474,788 to 475,210 GFF437 Position (kb) 473 474Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 472.380 kb on + strand, within GFF433at 472.380 kb on + strand, within GFF433at 472.380 kb on + strand, within GFF433at 472.381 kb on - strand, within GFF433at 472.381 kb on - strand, within GFF433at 472.381 kb on - strand, within GFF433at 472.381 kb on - strand, within GFF433at 472.381 kb on - strand, within GFF433at 472.381 kb on - strand, within GFF433at 472.381 kb on - strand, within GFF433at 472.399 kb on - strand, within GFF433at 472.399 kb on - strand, within GFF433at 472.657 kb on + strand, within GFF433at 472.657 kb on + strand, within GFF433at 472.657 kb on + strand, within GFF433at 472.657 kb on + strand, within GFF433at 472.657 kb on + strand, within GFF433at 472.657 kb on + strand, within GFF433at 472.657 kb on + strand, within GFF433at 472.657 kb on + strand, within GFF433at 472.658 kb on - strand, within GFF433at 472.658 kb on - strand, within GFF433at 472.658 kb on - strand, within GFF433at 472.658 kb on - strand, within GFF433at 472.658 kb on - strand, within GFF433at 472.658 kb on - strand, within GFF433at 472.663 kb on - strand, within GFF433at 472.663 kb on - strand, within GFF433at 472.663 kb on - strand, within GFF433at 472.779 kb on + strandat 472.779 kb on + strandat 472.779 kb on + strandat 472.779 kb on + strandat 472.779 kb on + strandat 472.779 kb on + strandat 472.779 kb on + strandat 472.779 kb on + strandat 472.780 kb on - strandat 472.780 kb on - strandat 472.780 kb on - strandat 472.780 kb on - strandat 472.780 kb on - strandat 472.980 kb on + strand, within GFF434at 472.980 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.175 kb on + strand, within GFF434at 473.176 kb on - strand, within GFF434at 473.176 kb on - strand, within GFF434at 473.176 kb on - strand, within GFF434at 473.176 kb on - strand, within GFF434at 473.176 kb on - strand, within GFF434at 473.229 kb on + strandat 473.229 kb on + strandat 473.230 kb on - strandat 473.230 kb on - strandat 473.230 kb on - strandat 473.230 kb on - strandat 473.257 kb on - strandat 473.264 kb on - strandat 473.272 kb on + strandat 473.272 kb on + strandat 473.272 kb on + strandat 473.272 kb on + strandat 473.273 kb on - strandat 473.273 kb on - strandat 473.273 kb on - strandat 473.273 kb on - strandat 473.273 kb on - strandat 473.273 kb on - strandat 473.273 kb on - strandat 473.273 kb on - strandat 473.461 kb on + strand, within GFF435at 473.494 kb on + strand, within GFF435at 473.494 kb on + strand, within GFF435at 473.495 kb on - strand, within GFF435at 473.515 kb on + strand, within GFF435at 473.515 kb on + strand, within GFF435at 473.515 kb on + strand, within GFF435at 473.516 kb on - strand, within GFF435at 473.516 kb on - strand, within GFF435at 473.596 kb on + strand, within GFF435at 473.597 kb on - strand, within GFF435at 473.597 kb on - strand, within GFF435at 473.776 kb on + strandat 473.776 kb on + strandat 473.776 kb on + strandat 473.776 kb on + strandat 473.776 kb on + strandat 473.776 kb on + strandat 473.776 kb on + strandat 473.776 kb on + strandat 473.777 kb on - strandat 473.777 kb on - strandat 473.777 kb on - strandat 473.777 kb on - strandat 473.777 kb on - strandat 473.777 kb on - strandat 473.788 kb on + strandat 473.789 kb on - strandat 473.789 kb on - strandat 473.789 kb on - strandat 473.789 kb on - strandat 473.789 kb on - strandat 474.317 kb on + strand, within GFF436at 474.386 kb on + strand, within GFF436at 474.386 kb on + strand, within GFF436at 474.386 kb on + strand, within GFF436at 474.387 kb on - strand, within GFF436at 474.387 kb on - strand, within GFF436at 474.506 kb on + strand, within GFF436at 474.507 kb on - strand, within GFF436at 474.507 kb on - strand, within GFF436

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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472,380 + GFF433 0.49 -0.5
472,380 + GFF433 0.49 -0.8
472,380 + GFF433 0.49 +1.0
472,381 - GFF433 0.49 +1.4
472,381 - GFF433 0.49 +0.1
472,381 - GFF433 0.49 -0.1
472,381 - GFF433 0.49 -0.4
472,381 - GFF433 0.49 +0.4
472,381 - GFF433 0.49 -0.9
472,381 - GFF433 0.49 -0.8
472,399 - GFF433 0.51 -0.2
472,399 - GFF433 0.51 +0.3
472,657 + GFF433 0.85 +0.5
472,657 + GFF433 0.85 -2.1
472,657 + GFF433 0.85 -0.2
472,657 + GFF433 0.85 -0.2
472,657 + GFF433 0.85 +0.4
472,657 + GFF433 0.85 -0.2
472,657 + GFF433 0.85 +0.9
472,657 + GFF433 0.85 -1.4
472,658 - GFF433 0.86 -0.2
472,658 - GFF433 0.86 -1.1
472,658 - GFF433 0.86 +0.2
472,658 - GFF433 0.86 +0.2
472,658 - GFF433 0.86 +1.1
472,658 - GFF433 0.86 +0.5
472,663 - GFF433 0.86 -0.7
472,663 - GFF433 0.86 -0.5
472,663 - GFF433 0.86 +1.2
472,779 + -0.1
472,779 + -1.1
472,779 + +0.3
472,779 + -0.0
472,779 + +0.0
472,779 + +0.1
472,779 + -0.8
472,779 + +0.4
472,780 - +0.7
472,780 - +1.2
472,780 - +1.6
472,780 - +0.4
472,780 - +0.5
472,980 + GFF434 0.44 +0.3
472,980 + GFF434 0.44 +2.7
473,175 + GFF434 0.86 +0.6
473,175 + GFF434 0.86 -0.1
473,175 + GFF434 0.86 -0.3
473,175 + GFF434 0.86 +0.1
473,175 + GFF434 0.86 +1.0
473,175 + GFF434 0.86 -0.1
473,175 + GFF434 0.86 -0.2
473,175 + GFF434 0.86 +0.1
473,175 + GFF434 0.86 -0.7
473,175 + GFF434 0.86 -0.2
473,175 + GFF434 0.86 -0.2
473,176 - GFF434 0.86 +0.1
473,176 - GFF434 0.86 +0.2
473,176 - GFF434 0.86 +0.8
473,176 - GFF434 0.86 -0.5
473,176 - GFF434 0.86 +1.1
473,229 + +0.7
473,229 + -0.9
473,230 - -1.9
473,230 - -0.5
473,230 - -1.1
473,230 - -0.2
473,257 - -0.7
473,264 - -0.3
473,272 + +0.3
473,272 + -0.9
473,272 + -0.8
473,272 + -0.3
473,273 - -0.8
473,273 - +0.2
473,273 - -1.2
473,273 - +0.8
473,273 - +0.5
473,273 - -1.3
473,273 - +0.4
473,273 - +1.3
473,461 + GFF435 0.36 -0.3
473,494 + GFF435 0.41 -2.1
473,494 + GFF435 0.41 -0.1
473,495 - GFF435 0.42 +0.3
473,515 + GFF435 0.45 -0.2
473,515 + GFF435 0.45 -3.0
473,515 + GFF435 0.45 -1.3
473,516 - GFF435 0.45 -0.0
473,516 - GFF435 0.45 +0.2
473,596 + GFF435 0.60 -1.0
473,597 - GFF435 0.60 -2.0
473,597 - GFF435 0.60 -1.4
473,776 + -0.3
473,776 + -1.1
473,776 + -1.2
473,776 + +0.4
473,776 + -1.5
473,776 + -1.2
473,776 + +0.2
473,776 + +1.0
473,777 - -0.2
473,777 - -0.2
473,777 - -0.4
473,777 - -0.2
473,777 - +0.8
473,777 - -1.1
473,788 + -0.5
473,789 - -1.4
473,789 - -0.1
473,789 - +0.2
473,789 - -0.4
473,789 - +0.8
474,317 + GFF436 0.62 -0.8
474,386 + GFF436 0.71 -0.2
474,386 + GFF436 0.71 +1.5
474,386 + GFF436 0.71 -0.4
474,387 - GFF436 0.72 -0.8
474,387 - GFF436 0.72 +0.9
474,506 + GFF436 0.88 -1.8
474,507 - GFF436 0.88 -0.0
474,507 - GFF436 0.88 -0.0

Or see this region's nucleotide sequence