Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4240 and GFF4241 overlap by 1 nucleotides GFF4241 and GFF4242 overlap by 4 nucleotides
GFF4240 - Integral membrane protein, at 151,154 to 152,875
GFF4240
GFF4241 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 152,875 to 155,901
GFF4241
GFF4242 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 155,898 to 156,944
GFF4242
Position (kb) 152
153
154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 151.932 kb on + strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.933 kb on - strand, within GFF4240 at 151.933 kb on - strand, within GFF4240 at 152.442 kb on + strand, within GFF4240 at 152.443 kb on - strand, within GFF4240 at 152.478 kb on + strand, within GFF4240 at 152.479 kb on - strand, within GFF4240 at 152.523 kb on + strand, within GFF4240 at 152.524 kb on - strand, within GFF4240 at 152.524 kb on - strand, within GFF4240 at 152.524 kb on - strand, within GFF4240 at 152.524 kb on - strand, within GFF4240 at 152.602 kb on + strand, within GFF4240 at 152.634 kb on + strand, within GFF4240 at 152.634 kb on + strand, within GFF4240 at 152.634 kb on + strand, within GFF4240 at 152.635 kb on - strand, within GFF4240 at 152.635 kb on - strand, within GFF4240 at 152.635 kb on - strand, within GFF4240 at 152.742 kb on + strand at 152.743 kb on - strand at 152.743 kb on - strand at 152.808 kb on + strand at 152.808 kb on + strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.943 kb on - strand at 153.146 kb on + strand at 153.146 kb on + strand at 153.146 kb on + strand at 153.146 kb on + strand at 153.147 kb on - strand at 153.147 kb on - strand at 153.716 kb on + strand, within GFF4241 at 153.717 kb on - strand, within GFF4241 at 153.717 kb on - strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.831 kb on - strand, within GFF4241 at 154.172 kb on + strand, within GFF4241 at 154.173 kb on - strand, within GFF4241 at 154.420 kb on - strand, within GFF4241 at 154.420 kb on - strand, within GFF4241 at 154.420 kb on - strand, within GFF4241 at 154.420 kb on - strand, within GFF4241 at 154.604 kb on + strand, within GFF4241 at 154.604 kb on + strand, within GFF4241 at 154.605 kb on - strand, within GFF4241 at 154.692 kb on - strand, within GFF4241 at 155.861 kb on + strand at 155.861 kb on + strand at 155.862 kb on - strand at 155.862 kb on - strand at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.508 kb on + strand, within GFF4242 at 156.509 kb on - strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.539 kb on - strand, within GFF4242 at 156.566 kb on - strand, within GFF4242 at 156.566 kb on - strand, within GFF4242 at 156.649 kb on + strand, within GFF4242 at 156.770 kb on - strand, within GFF4242 at 156.829 kb on + strand, within GFF4242 at 156.829 kb on + strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 151,932 + GFF4240 0.45 -0.2 151,932 + GFF4240 0.45 -2.0 151,932 + GFF4240 0.45 +0.1 151,932 + GFF4240 0.45 -1.2 151,933 - GFF4240 0.45 -0.3 151,933 - GFF4240 0.45 -1.0 152,442 + GFF4240 0.75 -0.8 152,443 - GFF4240 0.75 -0.4 152,478 + GFF4240 0.77 -1.7 152,479 - GFF4240 0.77 -0.6 152,523 + GFF4240 0.80 -0.6 152,524 - GFF4240 0.80 -2.1 152,524 - GFF4240 0.80 +0.1 152,524 - GFF4240 0.80 +1.4 152,524 - GFF4240 0.80 -0.8 152,602 + GFF4240 0.84 -1.2 152,634 + GFF4240 0.86 -1.9 152,634 + GFF4240 0.86 +0.0 152,634 + GFF4240 0.86 +0.3 152,635 - GFF4240 0.86 +0.4 152,635 - GFF4240 0.86 +0.2 152,635 - GFF4240 0.86 -0.8 152,742 + -0.8 152,743 - -0.1 152,743 - +0.1 152,808 + +0.1 152,808 + -0.9 152,909 + -1.2 152,909 + -0.0 152,909 + +0.6 152,909 + -0.1 152,910 - -1.3 152,910 - -0.8 152,910 - -0.1 152,910 - -0.6 152,910 - -1.2 152,910 - -1.0 152,910 - +2.5 152,910 - +2.2 152,943 - -0.2 153,146 + -0.5 153,146 + +0.3 153,146 + +0.4 153,146 + -0.8 153,147 - -0.1 153,147 - -0.2 153,716 + GFF4241 0.28 -0.0 153,717 - GFF4241 0.28 -1.2 153,717 - GFF4241 0.28 +0.6 153,719 + GFF4241 0.28 -0.4 153,719 + GFF4241 0.28 +0.8 153,719 + GFF4241 0.28 -0.4 153,719 + GFF4241 0.28 -2.0 153,719 + GFF4241 0.28 -1.2 153,719 + GFF4241 0.28 +0.1 153,719 + GFF4241 0.28 -0.4 153,719 + GFF4241 0.28 +1.1 153,719 + GFF4241 0.28 +0.8 153,719 + GFF4241 0.28 +0.4 153,720 - GFF4241 0.28 -0.3 153,720 - GFF4241 0.28 +0.2 153,720 - GFF4241 0.28 -1.4 153,720 - GFF4241 0.28 +0.6 153,720 - GFF4241 0.28 +0.6 153,720 - GFF4241 0.28 +0.6 153,831 - GFF4241 0.32 +0.2 154,172 + GFF4241 0.43 -0.6 154,173 - GFF4241 0.43 +0.2 154,420 - GFF4241 0.51 -0.8 154,420 - GFF4241 0.51 +1.2 154,420 - GFF4241 0.51 -1.6 154,420 - GFF4241 0.51 -0.8 154,604 + GFF4241 0.57 -1.6 154,604 + GFF4241 0.57 -0.1 154,605 - GFF4241 0.57 +0.8 154,692 - GFF4241 0.60 -0.9 155,861 + -0.2 155,861 + -1.0 155,862 - -0.0 155,862 - -0.2 156,268 + GFF4242 0.35 -0.4 156,268 + GFF4242 0.35 -0.8 156,268 + GFF4242 0.35 -0.5 156,268 + GFF4242 0.35 +0.9 156,268 + GFF4242 0.35 +0.2 156,269 - GFF4242 0.35 -0.6 156,269 - GFF4242 0.35 -1.2 156,269 - GFF4242 0.35 +0.6 156,269 - GFF4242 0.35 -1.4 156,269 - GFF4242 0.35 -0.2 156,383 - GFF4242 0.46 +0.8 156,383 - GFF4242 0.46 -1.5 156,383 - GFF4242 0.46 -0.2 156,383 - GFF4242 0.46 -0.4 156,508 + GFF4242 0.58 +0.2 156,509 - GFF4242 0.58 +0.4 156,514 + GFF4242 0.59 -1.0 156,514 + GFF4242 0.59 -0.4 156,514 + GFF4242 0.59 -0.1 156,514 + GFF4242 0.59 -0.1 156,514 + GFF4242 0.59 +0.2 156,514 + GFF4242 0.59 +0.4 156,514 + GFF4242 0.59 +0.4 156,514 + GFF4242 0.59 -0.0 156,514 + GFF4242 0.59 -2.5 156,514 + GFF4242 0.59 -0.1 156,514 + GFF4242 0.59 -1.8 156,514 + GFF4242 0.59 -1.2 156,514 + GFF4242 0.59 -0.6 156,514 + GFF4242 0.59 -0.5 156,514 + GFF4242 0.59 -0.5 156,514 + GFF4242 0.59 -1.2 156,514 + GFF4242 0.59 +0.4 156,514 + GFF4242 0.59 -0.1 156,515 - GFF4242 0.59 +1.0 156,515 - GFF4242 0.59 -0.7 156,515 - GFF4242 0.59 +0.3 156,515 - GFF4242 0.59 -0.4 156,515 - GFF4242 0.59 -0.6 156,515 - GFF4242 0.59 -0.5 156,515 - GFF4242 0.59 -0.5 156,515 - GFF4242 0.59 +0.1 156,515 - GFF4242 0.59 +1.1 156,515 - GFF4242 0.59 -1.4 156,515 - GFF4242 0.59 +0.2 156,515 - GFF4242 0.59 -1.7 156,515 - GFF4242 0.59 -0.9 156,515 - GFF4242 0.59 -1.2 156,515 - GFF4242 0.59 -0.5 156,539 - GFF4242 0.61 -0.3 156,566 - GFF4242 0.64 +0.2 156,566 - GFF4242 0.64 +0.4 156,649 + GFF4242 0.72 +0.5 156,770 - GFF4242 0.83 +0.1 156,829 + GFF4242 0.89 -1.3 156,829 + GFF4242 0.89 -0.2 156,830 - GFF4242 0.89 -0.9 156,830 - GFF4242 0.89 -0.4 156,830 - GFF4242 0.89 -0.2 156,830 - GFF4242 0.89 +0.4
Or see this region's nucleotide sequence