Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF404 and GFF405 are separated by 26 nucleotides GFF405 and GFF406 are separated by 27 nucleotides GFF406 and GFF407 are separated by 73 nucleotides
GFF404 - Hydrolase, alpha/beta fold family, at 439,206 to 440,198
GFF404
GFF405 - 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 440,225 to 440,995
GFF405
GFF406 - hypothetical protein, at 441,023 to 441,727
GFF406
GFF407 - no description, at 441,801 to 442,283
GFF407
Position (kb) 440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 439.396 kb on + strand, within GFF404 at 439.396 kb on + strand, within GFF404 at 439.396 kb on + strand, within GFF404 at 439.396 kb on + strand, within GFF404 at 439.396 kb on + strand, within GFF404 at 439.396 kb on + strand, within GFF404 at 439.397 kb on - strand, within GFF404 at 439.397 kb on - strand, within GFF404 at 439.397 kb on - strand, within GFF404 at 439.397 kb on - strand, within GFF404 at 439.477 kb on + strand, within GFF404 at 439.477 kb on + strand, within GFF404 at 439.478 kb on - strand, within GFF404 at 439.478 kb on - strand, within GFF404 at 439.478 kb on - strand, within GFF404 at 439.478 kb on - strand, within GFF404 at 439.478 kb on - strand, within GFF404 at 439.478 kb on - strand, within GFF404 at 439.478 kb on - strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.565 kb on + strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.566 kb on - strand, within GFF404 at 439.660 kb on + strand, within GFF404 at 439.661 kb on - strand, within GFF404 at 439.681 kb on + strand, within GFF404 at 439.681 kb on + strand, within GFF404 at 439.681 kb on + strand, within GFF404 at 439.681 kb on + strand, within GFF404 at 439.681 kb on + strand, within GFF404 at 439.681 kb on + strand, within GFF404 at 439.681 kb on + strand, within GFF404 at 439.681 kb on + strand, within GFF404 at 439.681 kb on + strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.682 kb on - strand, within GFF404 at 439.825 kb on + strand, within GFF404 at 439.825 kb on + strand, within GFF404 at 439.825 kb on + strand, within GFF404 at 439.826 kb on - strand, within GFF404 at 439.826 kb on - strand, within GFF404 at 439.826 kb on - strand, within GFF404 at 439.826 kb on - strand, within GFF404 at 439.826 kb on - strand, within GFF404 at 439.826 kb on - strand, within GFF404 at 439.891 kb on + strand, within GFF404 at 439.892 kb on - strand, within GFF404 at 439.892 kb on - strand, within GFF404 at 439.892 kb on - strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.906 kb on + strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.907 kb on - strand, within GFF404 at 439.965 kb on + strand, within GFF404 at 439.965 kb on + strand, within GFF404 at 439.965 kb on + strand, within GFF404 at 439.965 kb on + strand, within GFF404 at 439.966 kb on - strand, within GFF404 at 439.966 kb on - strand, within GFF404 at 439.966 kb on - strand, within GFF404 at 439.966 kb on - strand, within GFF404 at 440.092 kb on + strand, within GFF404 at 440.092 kb on + strand, within GFF404 at 440.092 kb on + strand, within GFF404 at 440.092 kb on + strand, within GFF404 at 440.093 kb on - strand, within GFF404 at 440.093 kb on - strand, within GFF404 at 440.093 kb on - strand, within GFF404 at 440.093 kb on - strand, within GFF404 at 440.093 kb on - strand, within GFF404 at 440.093 kb on - strand, within GFF404 at 440.182 kb on + strand at 440.182 kb on + strand at 440.182 kb on + strand at 440.182 kb on + strand at 440.182 kb on + strand at 440.182 kb on + strand at 440.182 kb on + strand at 440.183 kb on - strand at 440.183 kb on - strand at 440.183 kb on - strand at 440.183 kb on - strand at 440.183 kb on - strand at 440.201 kb on + strand at 440.201 kb on + strand at 440.201 kb on + strand at 440.202 kb on - strand at 440.202 kb on - strand at 440.202 kb on - strand at 440.202 kb on - strand at 440.202 kb on - strand at 440.202 kb on - strand at 440.202 kb on - strand at 440.202 kb on - strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.222 kb on + strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.223 kb on - strand at 440.387 kb on + strand, within GFF405 at 440.388 kb on - strand, within GFF405 at 440.388 kb on - strand, within GFF405 at 440.388 kb on - strand, within GFF405 at 440.572 kb on + strand, within GFF405 at 440.572 kb on + strand, within GFF405 at 440.573 kb on - strand, within GFF405 at 440.573 kb on - strand, within GFF405 at 440.573 kb on - strand, within GFF405 at 440.573 kb on - strand, within GFF405 at 440.675 kb on + strand, within GFF405 at 440.675 kb on + strand, within GFF405 at 440.675 kb on + strand, within GFF405 at 440.675 kb on + strand, within GFF405 at 440.676 kb on - strand, within GFF405 at 440.676 kb on - strand, within GFF405 at 440.676 kb on - strand, within GFF405 at 440.676 kb on - strand, within GFF405 at 440.993 kb on + strand at 440.993 kb on + strand at 440.994 kb on - strand at 440.994 kb on - strand at 441.011 kb on + strand at 441.012 kb on - strand at 441.024 kb on + strand at 441.024 kb on + strand at 441.024 kb on + strand at 441.024 kb on - strand at 441.025 kb on - strand at 441.025 kb on - strand at 441.025 kb on - strand at 441.025 kb on - strand at 441.025 kb on - strand at 441.187 kb on - strand, within GFF406 at 441.426 kb on + strand, within GFF406 at 441.426 kb on + strand, within GFF406 at 441.426 kb on + strand, within GFF406 at 441.427 kb on - strand, within GFF406 at 441.427 kb on - strand, within GFF406 at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.732 kb on + strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.733 kb on - strand at 441.750 kb on - strand at 441.750 kb on - strand at 441.750 kb on - strand at 441.750 kb on - strand at 441.750 kb on - strand at 441.952 kb on + strand, within GFF407 at 441.952 kb on + strand, within GFF407 at 441.952 kb on + strand, within GFF407 at 441.953 kb on - strand, within GFF407 at 441.953 kb on - strand, within GFF407 at 441.953 kb on - strand, within GFF407 at 441.953 kb on - strand, within GFF407 at 441.953 kb on - strand, within GFF407 at 441.953 kb on - strand, within GFF407 at 441.953 kb on - strand, within GFF407
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 439,396 + GFF404 0.19 +1.0 439,396 + GFF404 0.19 +0.1 439,396 + GFF404 0.19 -0.2 439,396 + GFF404 0.19 -0.3 439,396 + GFF404 0.19 -0.7 439,396 + GFF404 0.19 -1.2 439,397 - GFF404 0.19 +0.3 439,397 - GFF404 0.19 -0.5 439,397 - GFF404 0.19 +0.1 439,397 - GFF404 0.19 -1.8 439,477 + GFF404 0.27 -0.6 439,477 + GFF404 0.27 -0.5 439,478 - GFF404 0.27 -0.1 439,478 - GFF404 0.27 +0.4 439,478 - GFF404 0.27 +0.1 439,478 - GFF404 0.27 -0.2 439,478 - GFF404 0.27 +0.6 439,478 - GFF404 0.27 +0.5 439,478 - GFF404 0.27 -0.2 439,565 + GFF404 0.36 +0.5 439,565 + GFF404 0.36 -1.4 439,565 + GFF404 0.36 -0.2 439,565 + GFF404 0.36 -0.0 439,565 + GFF404 0.36 -0.6 439,565 + GFF404 0.36 -0.3 439,565 + GFF404 0.36 +0.2 439,565 + GFF404 0.36 -0.4 439,565 + GFF404 0.36 +0.7 439,565 + GFF404 0.36 -0.8 439,566 - GFF404 0.36 -1.4 439,566 - GFF404 0.36 -0.4 439,566 - GFF404 0.36 +0.1 439,566 - GFF404 0.36 -0.9 439,566 - GFF404 0.36 -1.2 439,566 - GFF404 0.36 +0.0 439,566 - GFF404 0.36 -0.8 439,566 - GFF404 0.36 -0.3 439,566 - GFF404 0.36 -0.1 439,566 - GFF404 0.36 -0.7 439,566 - GFF404 0.36 -0.3 439,566 - GFF404 0.36 -0.0 439,566 - GFF404 0.36 -0.5 439,566 - GFF404 0.36 +0.7 439,566 - GFF404 0.36 -0.8 439,660 + GFF404 0.46 -0.3 439,661 - GFF404 0.46 -0.6 439,681 + GFF404 0.48 +0.0 439,681 + GFF404 0.48 -1.4 439,681 + GFF404 0.48 -0.9 439,681 + GFF404 0.48 -1.2 439,681 + GFF404 0.48 -0.2 439,681 + GFF404 0.48 -0.8 439,681 + GFF404 0.48 +0.8 439,681 + GFF404 0.48 -1.1 439,681 + GFF404 0.48 -0.4 439,682 - GFF404 0.48 -0.3 439,682 - GFF404 0.48 -0.5 439,682 - GFF404 0.48 -0.2 439,682 - GFF404 0.48 -0.4 439,682 - GFF404 0.48 -2.6 439,682 - GFF404 0.48 +1.6 439,682 - GFF404 0.48 +0.2 439,682 - GFF404 0.48 +0.1 439,682 - GFF404 0.48 -0.9 439,682 - GFF404 0.48 +0.0 439,682 - GFF404 0.48 -0.6 439,682 - GFF404 0.48 -0.0 439,682 - GFF404 0.48 +0.9 439,682 - GFF404 0.48 -0.4 439,682 - GFF404 0.48 -0.5 439,682 - GFF404 0.48 +0.3 439,682 - GFF404 0.48 -0.5 439,682 - GFF404 0.48 -1.1 439,682 - GFF404 0.48 +0.7 439,682 - GFF404 0.48 -1.0 439,682 - GFF404 0.48 -0.9 439,682 - GFF404 0.48 -0.9 439,825 + GFF404 0.62 +0.7 439,825 + GFF404 0.62 -1.5 439,825 + GFF404 0.62 -0.1 439,826 - GFF404 0.62 -1.5 439,826 - GFF404 0.62 -0.4 439,826 - GFF404 0.62 +0.2 439,826 - GFF404 0.62 -0.1 439,826 - GFF404 0.62 -0.4 439,826 - GFF404 0.62 -0.4 439,891 + GFF404 0.69 -0.9 439,892 - GFF404 0.69 +1.6 439,892 - GFF404 0.69 -0.4 439,892 - GFF404 0.69 -0.2 439,906 + GFF404 0.70 +0.9 439,906 + GFF404 0.70 +0.1 439,906 + GFF404 0.70 -0.1 439,906 + GFF404 0.70 -0.7 439,906 + GFF404 0.70 +0.4 439,906 + GFF404 0.70 -0.3 439,906 + GFF404 0.70 -0.3 439,906 + GFF404 0.70 +0.2 439,906 + GFF404 0.70 -0.6 439,906 + GFF404 0.70 -1.4 439,906 + GFF404 0.70 +1.4 439,906 + GFF404 0.70 -0.8 439,906 + GFF404 0.70 -0.3 439,906 + GFF404 0.70 -0.7 439,906 + GFF404 0.70 -0.6 439,906 + GFF404 0.70 +2.4 439,906 + GFF404 0.70 -0.7 439,906 + GFF404 0.70 -0.4 439,906 + GFF404 0.70 -2.2 439,907 - GFF404 0.71 -0.4 439,907 - GFF404 0.71 +0.2 439,907 - GFF404 0.71 -0.4 439,907 - GFF404 0.71 +0.4 439,907 - GFF404 0.71 -0.2 439,907 - GFF404 0.71 +0.1 439,907 - GFF404 0.71 +0.6 439,907 - GFF404 0.71 -0.1 439,907 - GFF404 0.71 +0.6 439,907 - GFF404 0.71 +0.2 439,907 - GFF404 0.71 +0.3 439,907 - GFF404 0.71 -0.7 439,907 - GFF404 0.71 +0.3 439,907 - GFF404 0.71 -0.3 439,907 - GFF404 0.71 -2.9 439,965 + GFF404 0.76 -0.2 439,965 + GFF404 0.76 -1.6 439,965 + GFF404 0.76 +0.4 439,965 + GFF404 0.76 -0.3 439,966 - GFF404 0.77 -0.1 439,966 - GFF404 0.77 -0.8 439,966 - GFF404 0.77 -0.2 439,966 - GFF404 0.77 -0.4 440,092 + GFF404 0.89 -0.8 440,092 + GFF404 0.89 -0.3 440,092 + GFF404 0.89 -0.7 440,092 + GFF404 0.89 -0.2 440,093 - GFF404 0.89 +0.5 440,093 - GFF404 0.89 -0.4 440,093 - GFF404 0.89 -1.2 440,093 - GFF404 0.89 -1.5 440,093 - GFF404 0.89 -0.1 440,093 - GFF404 0.89 -0.2 440,182 + -0.3 440,182 + -0.1 440,182 + -0.2 440,182 + +0.1 440,182 + +0.3 440,182 + -1.1 440,182 + +0.6 440,183 - +1.0 440,183 - -0.2 440,183 - -1.3 440,183 - +0.1 440,183 - -0.9 440,201 + +1.4 440,201 + -1.1 440,201 + -0.2 440,202 - +0.1 440,202 - -0.0 440,202 - -0.2 440,202 - +0.6 440,202 - -0.8 440,202 - +0.4 440,202 - -0.0 440,202 - -0.8 440,222 + -0.5 440,222 + +1.0 440,222 + +0.4 440,222 + -0.9 440,222 + -0.5 440,222 + -0.4 440,222 + -1.2 440,222 + -1.7 440,222 + +1.4 440,222 + -0.5 440,222 + +0.0 440,223 - +0.4 440,223 - -1.4 440,223 - +1.2 440,223 - -0.4 440,223 - -1.2 440,223 - -1.3 440,223 - -0.1 440,223 - -0.2 440,223 - -1.0 440,223 - -1.2 440,223 - +1.4 440,223 - -0.3 440,387 + GFF405 0.21 -0.1 440,388 - GFF405 0.21 -0.7 440,388 - GFF405 0.21 +0.6 440,388 - GFF405 0.21 +0.8 440,572 + GFF405 0.45 -0.8 440,572 + GFF405 0.45 -0.1 440,573 - GFF405 0.45 -0.7 440,573 - GFF405 0.45 -0.2 440,573 - GFF405 0.45 -0.1 440,573 - GFF405 0.45 -0.6 440,675 + GFF405 0.58 +1.2 440,675 + GFF405 0.58 +0.1 440,675 + GFF405 0.58 +0.6 440,675 + GFF405 0.58 +0.3 440,676 - GFF405 0.58 -0.3 440,676 - GFF405 0.58 -0.4 440,676 - GFF405 0.58 -0.3 440,676 - GFF405 0.58 -0.8 440,993 + -0.7 440,993 + +0.7 440,994 - -0.4 440,994 - -0.5 441,011 + -0.5 441,012 - -0.9 441,024 + -1.0 441,024 + -0.6 441,024 + -0.3 441,024 - -0.1 441,025 - -0.1 441,025 - -1.4 441,025 - -0.6 441,025 - +0.1 441,025 - -1.4 441,187 - GFF406 0.23 -1.2 441,426 + GFF406 0.57 +1.7 441,426 + GFF406 0.57 -1.2 441,426 + GFF406 0.57 +0.8 441,427 - GFF406 0.57 -0.6 441,427 - GFF406 0.57 +0.0 441,732 + +0.7 441,732 + +0.8 441,732 + -0.6 441,732 + -1.4 441,732 + +0.1 441,732 + +0.5 441,732 + -1.3 441,732 + -0.6 441,732 + -0.8 441,732 + -1.1 441,732 + -0.2 441,732 + -2.1 441,732 + +0.0 441,732 + +1.7 441,732 + -1.2 441,732 + +0.2 441,732 + +0.3 441,732 + +0.6 441,732 + -1.1 441,733 - +1.4 441,733 - -0.8 441,733 - -0.2 441,733 - -0.8 441,733 - -0.7 441,733 - -0.9 441,733 - -0.9 441,733 - -0.4 441,733 - +0.1 441,733 - -1.6 441,733 - +1.4 441,733 - -0.6 441,733 - +0.6 441,733 - +0.0 441,733 - +0.5 441,733 - +0.5 441,733 - -0.2 441,733 - -0.1 441,733 - -0.3 441,733 - +0.2 441,733 - +0.0 441,733 - -0.5 441,750 - -0.9 441,750 - +0.2 441,750 - +0.5 441,750 - +0.3 441,750 - -1.4 441,952 + GFF407 0.31 -0.4 441,952 + GFF407 0.31 -1.5 441,952 + GFF407 0.31 -1.0 441,953 - GFF407 0.31 +0.5 441,953 - GFF407 0.31 -1.8 441,953 - GFF407 0.31 -0.1 441,953 - GFF407 0.31 -0.0 441,953 - GFF407 0.31 -0.6 441,953 - GFF407 0.31 -0.2 441,953 - GFF407 0.31 -0.2
Or see this region's nucleotide sequence