Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3985 and GFF3986 are separated by 4 nucleotides GFF3986 and GFF3987 are separated by 53 nucleotides GFF3987 and GFF3988 overlap by 4 nucleotides GFF3988 and GFF3989 are separated by 2 nucleotides GFF3989 and GFF3990 are separated by 6 nucleotides
GFF3985 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 189,107 to 190,696
GFF3985
GFF3986 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 190,701 to 191,447
GFF3986
GFF3987 - 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 191,501 to 192,277
GFF3987
GFF3988 - Transcriptional regulator, MarR family, at 192,274 to 192,804
GFF3988
GFF3989 - PUTATIVE 4-HYDROXYBENZOYL-COA THIOESTERASE PROTEIN( EC:3.1.2.23 ), at 192,807 to 193,241
GFF3989
GFF3990 - hypothetical protein, at 193,248 to 193,643
GFF3990
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1 at 190.562 kb on + strand at 190.694 kb on + strand at 190.694 kb on + strand at 190.695 kb on - strand at 190.695 kb on - strand at 190.695 kb on - strand at 191.097 kb on - strand, within GFF3986 at 191.163 kb on + strand, within GFF3986 at 191.164 kb on - strand, within GFF3986 at 191.164 kb on - strand, within GFF3986 at 191.373 kb on + strand at 191.504 kb on + strand at 191.505 kb on - strand at 191.709 kb on + strand, within GFF3987 at 191.709 kb on + strand, within GFF3987 at 191.710 kb on - strand, within GFF3987 at 191.917 kb on + strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.946 kb on - strand, within GFF3987 at 191.951 kb on + strand, within GFF3987 at 191.951 kb on + strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.952 kb on - strand, within GFF3987 at 191.963 kb on + strand, within GFF3987 at 191.964 kb on - strand, within GFF3987 at 192.059 kb on + strand, within GFF3987 at 192.061 kb on + strand, within GFF3987 at 192.062 kb on - strand, within GFF3987 at 192.393 kb on + strand, within GFF3988 at 192.445 kb on - strand, within GFF3988 at 192.466 kb on + strand, within GFF3988 at 192.467 kb on - strand, within GFF3988 at 192.467 kb on - strand, within GFF3988 at 192.487 kb on + strand, within GFF3988 at 192.523 kb on + strand, within GFF3988 at 192.523 kb on + strand, within GFF3988 at 192.524 kb on - strand, within GFF3988 at 192.524 kb on - strand, within GFF3988 at 192.524 kb on - strand, within GFF3988 at 192.741 kb on + strand, within GFF3988 at 192.883 kb on - strand, within GFF3989 at 192.892 kb on - strand, within GFF3989 at 192.892 kb on - strand, within GFF3989 at 192.951 kb on + strand, within GFF3989 at 192.951 kb on + strand, within GFF3989 at 192.952 kb on - strand, within GFF3989 at 193.274 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 190,562 + +0.0 190,694 + -0.4 190,694 + -0.2 190,695 - +1.1 190,695 - -0.6 190,695 - -0.3 191,097 - GFF3986 0.53 -0.7 191,163 + GFF3986 0.62 -0.7 191,164 - GFF3986 0.62 -1.1 191,164 - GFF3986 0.62 -2.6 191,373 + -0.5 191,504 + -0.9 191,505 - -0.5 191,709 + GFF3987 0.27 -1.1 191,709 + GFF3987 0.27 -0.7 191,710 - GFF3987 0.27 -0.8 191,917 + GFF3987 0.54 -0.6 191,946 - GFF3987 0.57 +0.4 191,946 - GFF3987 0.57 -0.5 191,946 - GFF3987 0.57 +0.9 191,946 - GFF3987 0.57 +0.3 191,946 - GFF3987 0.57 -0.0 191,951 + GFF3987 0.58 -0.5 191,951 + GFF3987 0.58 -1.9 191,952 - GFF3987 0.58 -0.3 191,952 - GFF3987 0.58 +0.7 191,952 - GFF3987 0.58 -1.3 191,952 - GFF3987 0.58 +1.1 191,952 - GFF3987 0.58 -0.2 191,952 - GFF3987 0.58 +1.7 191,963 + GFF3987 0.59 -0.7 191,964 - GFF3987 0.60 -0.9 192,059 + GFF3987 0.72 -0.6 192,061 + GFF3987 0.72 -0.9 192,062 - GFF3987 0.72 -0.5 192,393 + GFF3988 0.22 -0.4 192,445 - GFF3988 0.32 -0.0 192,466 + GFF3988 0.36 -0.7 192,467 - GFF3988 0.36 +0.0 192,467 - GFF3988 0.36 -0.2 192,487 + GFF3988 0.40 +0.5 192,523 + GFF3988 0.47 -0.1 192,523 + GFF3988 0.47 -1.2 192,524 - GFF3988 0.47 -0.7 192,524 - GFF3988 0.47 -0.4 192,524 - GFF3988 0.47 -0.1 192,741 + GFF3988 0.88 +0.4 192,883 - GFF3989 0.17 -1.9 192,892 - GFF3989 0.20 +0.3 192,892 - GFF3989 0.20 +0.8 192,951 + GFF3989 0.33 -1.0 192,951 + GFF3989 0.33 +0.1 192,952 - GFF3989 0.33 -0.1 193,274 + -0.4
Or see this region's nucleotide sequence