Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3834 and GFF3835 overlap by 4 nucleotides GFF3835 and GFF3836 are separated by 64 nucleotides GFF3836 and GFF3837 overlap by 4 nucleotides GFF3837 and GFF3838 are separated by 166 nucleotides
GFF3834 - hypothetical protein, at 25,011 to 25,556
GFF3834
GFF3835 - ADP-ribosylglycohydrolase family protein, at 25,553 to 25,954
GFF3835
GFF3836 - Cyclic beta-1,2-glucan synthase (EC 2.4.1.-), at 26,019 to 34,184
GFF3836
GFF3837 - no description, at 34,181 to 34,399
GFF3837
GFF3838 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 34,566 to 37,409
GFF3838
Position (kb) 26
27
28
29
30
31
32
33
34
35 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 25.019 kb on - strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.380 kb on - strand, within GFF3834 at 25.468 kb on + strand, within GFF3834 at 25.688 kb on + strand, within GFF3835 at 25.688 kb on + strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 26.001 kb on - strand at 26.281 kb on + strand at 26.281 kb on + strand at 26.308 kb on + strand at 26.308 kb on + strand at 26.308 kb on - strand at 26.309 kb on - strand at 26.309 kb on - strand at 26.309 kb on - strand at 26.323 kb on + strand at 26.323 kb on + strand at 26.323 kb on + strand at 26.324 kb on - strand at 26.324 kb on - strand at 26.345 kb on - strand at 26.485 kb on + strand at 26.486 kb on - strand at 26.486 kb on - strand at 26.530 kb on + strand at 26.531 kb on - strand at 27.067 kb on + strand, within GFF3836 at 27.067 kb on + strand, within GFF3836 at 27.067 kb on + strand, within GFF3836 at 27.067 kb on + strand, within GFF3836 at 27.068 kb on - strand, within GFF3836 at 27.068 kb on - strand, within GFF3836 at 27.068 kb on - strand, within GFF3836 at 27.070 kb on + strand, within GFF3836 at 27.070 kb on + strand, within GFF3836 at 27.071 kb on - strand, within GFF3836 at 27.071 kb on - strand, within GFF3836 at 27.071 kb on - strand, within GFF3836 at 27.160 kb on + strand, within GFF3836 at 27.176 kb on - strand, within GFF3836 at 27.421 kb on + strand, within GFF3836 at 27.809 kb on + strand, within GFF3836 at 28.053 kb on - strand, within GFF3836 at 28.053 kb on - strand, within GFF3836 at 28.054 kb on + strand, within GFF3836 at 28.054 kb on + strand, within GFF3836 at 28.054 kb on + strand, within GFF3836 at 28.054 kb on + strand, within GFF3836 at 28.054 kb on + strand, within GFF3836 at 28.055 kb on - strand, within GFF3836 at 28.055 kb on - strand, within GFF3836 at 28.055 kb on - strand, within GFF3836 at 28.055 kb on - strand, within GFF3836 at 28.055 kb on - strand, within GFF3836 at 28.153 kb on + strand, within GFF3836 at 28.153 kb on + strand, within GFF3836 at 28.153 kb on + strand, within GFF3836 at 28.154 kb on - strand, within GFF3836 at 28.154 kb on - strand, within GFF3836 at 28.154 kb on - strand, within GFF3836 at 28.154 kb on - strand, within GFF3836 at 28.154 kb on - strand, within GFF3836 at 28.307 kb on + strand, within GFF3836 at 28.308 kb on - strand, within GFF3836 at 28.585 kb on + strand, within GFF3836 at 28.585 kb on + strand, within GFF3836 at 28.585 kb on + strand, within GFF3836 at 28.586 kb on - strand, within GFF3836 at 28.586 kb on - strand, within GFF3836 at 28.586 kb on - strand, within GFF3836 at 28.681 kb on + strand, within GFF3836 at 28.681 kb on + strand, within GFF3836 at 28.682 kb on - strand, within GFF3836 at 28.895 kb on - strand, within GFF3836 at 28.895 kb on - strand, within GFF3836 at 29.023 kb on + strand, within GFF3836 at 29.023 kb on + strand, within GFF3836 at 29.024 kb on - strand, within GFF3836 at 29.024 kb on - strand, within GFF3836 at 29.024 kb on - strand, within GFF3836 at 29.024 kb on - strand, within GFF3836 at 29.440 kb on + strand, within GFF3836 at 29.440 kb on + strand, within GFF3836 at 29.441 kb on - strand, within GFF3836 at 29.541 kb on + strand, within GFF3836 at 29.542 kb on - strand, within GFF3836 at 29.542 kb on - strand, within GFF3836 at 29.674 kb on + strand, within GFF3836 at 29.674 kb on + strand, within GFF3836 at 29.675 kb on - strand, within GFF3836 at 29.675 kb on - strand, within GFF3836 at 29.675 kb on - strand, within GFF3836 at 29.689 kb on + strand, within GFF3836 at 29.690 kb on - strand, within GFF3836 at 29.782 kb on + strand, within GFF3836 at 30.214 kb on + strand, within GFF3836 at 30.283 kb on + strand, within GFF3836 at 30.289 kb on + strand, within GFF3836 at 30.317 kb on - strand, within GFF3836 at 30.448 kb on + strand, within GFF3836 at 30.448 kb on + strand, within GFF3836 at 30.448 kb on + strand, within GFF3836 at 30.449 kb on - strand, within GFF3836 at 30.449 kb on - strand, within GFF3836 at 30.601 kb on + strand, within GFF3836 at 30.601 kb on + strand, within GFF3836 at 30.602 kb on - strand, within GFF3836 at 30.604 kb on + strand, within GFF3836 at 30.604 kb on + strand, within GFF3836 at 30.604 kb on + strand, within GFF3836 at 30.605 kb on - strand, within GFF3836 at 30.605 kb on - strand, within GFF3836 at 30.605 kb on - strand, within GFF3836 at 30.605 kb on - strand, within GFF3836 at 30.605 kb on - strand, within GFF3836 at 30.605 kb on - strand, within GFF3836 at 30.670 kb on + strand, within GFF3836 at 30.670 kb on + strand, within GFF3836 at 30.670 kb on + strand, within GFF3836 at 30.671 kb on - strand, within GFF3836 at 30.838 kb on + strand, within GFF3836 at 30.838 kb on + strand, within GFF3836 at 30.838 kb on + strand, within GFF3836 at 30.838 kb on + strand, within GFF3836 at 30.838 kb on + strand, within GFF3836 at 30.839 kb on - strand, within GFF3836 at 30.839 kb on - strand, within GFF3836 at 30.839 kb on - strand, within GFF3836 at 30.839 kb on - strand, within GFF3836 at 30.874 kb on + strand, within GFF3836 at 31.003 kb on + strand, within GFF3836 at 31.003 kb on + strand, within GFF3836 at 31.003 kb on + strand, within GFF3836 at 31.003 kb on + strand, within GFF3836 at 31.003 kb on + strand, within GFF3836 at 31.003 kb on + strand, within GFF3836 at 31.004 kb on - strand, within GFF3836 at 31.004 kb on - strand, within GFF3836 at 31.004 kb on - strand, within GFF3836 at 31.004 kb on - strand, within GFF3836 at 31.004 kb on - strand, within GFF3836 at 31.004 kb on - strand, within GFF3836 at 31.004 kb on - strand, within GFF3836 at 31.004 kb on - strand, within GFF3836 at 31.147 kb on + strand, within GFF3836 at 31.148 kb on - strand, within GFF3836 at 31.148 kb on - strand, within GFF3836 at 32.021 kb on - strand, within GFF3836 at 32.021 kb on - strand, within GFF3836 at 32.021 kb on - strand, within GFF3836 at 32.021 kb on - strand, within GFF3836 at 32.044 kb on + strand, within GFF3836 at 32.269 kb on + strand, within GFF3836 at 32.269 kb on + strand, within GFF3836 at 32.269 kb on + strand, within GFF3836 at 32.270 kb on - strand, within GFF3836 at 32.270 kb on - strand, within GFF3836 at 32.470 kb on + strand, within GFF3836 at 32.470 kb on + strand, within GFF3836 at 32.471 kb on - strand, within GFF3836 at 32.471 kb on - strand, within GFF3836 at 32.471 kb on - strand, within GFF3836 at 32.818 kb on - strand, within GFF3836 at 32.902 kb on + strand, within GFF3836 at 32.902 kb on + strand, within GFF3836 at 32.902 kb on + strand, within GFF3836 at 32.902 kb on + strand, within GFF3836 at 32.903 kb on - strand, within GFF3836 at 32.903 kb on - strand, within GFF3836 at 32.903 kb on - strand, within GFF3836 at 33.028 kb on + strand, within GFF3836 at 33.028 kb on + strand, within GFF3836 at 33.028 kb on + strand, within GFF3836 at 33.029 kb on - strand, within GFF3836 at 33.029 kb on - strand, within GFF3836 at 33.029 kb on - strand, within GFF3836 at 33.029 kb on - strand, within GFF3836 at 33.031 kb on + strand, within GFF3836 at 33.031 kb on + strand, within GFF3836 at 33.244 kb on - strand, within GFF3836 at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.455 kb on - strand at 33.455 kb on - strand at 33.455 kb on - strand at 33.455 kb on - strand at 33.490 kb on + strand at 33.491 kb on - strand at 33.612 kb on + strand at 33.612 kb on + strand at 33.613 kb on - strand at 33.676 kb on + strand at 33.736 kb on + strand at 33.736 kb on + strand at 33.736 kb on + strand at 33.737 kb on + strand at 33.737 kb on - strand at 33.737 kb on - strand at 33.737 kb on - strand at 33.737 kb on - strand at 33.754 kb on + strand at 33.755 kb on - strand at 33.755 kb on - strand at 33.755 kb on - strand at 33.755 kb on - strand at 33.809 kb on - strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.812 kb on - strand at 33.812 kb on - strand at 33.812 kb on - strand at 33.812 kb on - strand at 33.901 kb on + strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.932 kb on - strand at 34.378 kb on + strand at 34.416 kb on + strand at 34.476 kb on + strand at 34.477 kb on - strand at 34.477 kb on - strand at 34.486 kb on + strand at 34.487 kb on - strand at 34.515 kb on + strand at 34.516 kb on - strand at 34.516 kb on - strand at 34.516 kb on - strand at 34.699 kb on + strand at 34.699 kb on + strand at 34.699 kb on + strand at 34.700 kb on - strand at 34.700 kb on - strand at 34.862 kb on - strand, within GFF3838 at 34.904 kb on - strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.946 kb on - strand, within GFF3838 at 34.946 kb on - strand, within GFF3838 at 34.946 kb on - strand, within GFF3838
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 25,019 - +0.3 25,019 - +1.2 25,019 - +0.1 25,019 - -0.5 25,380 - GFF3834 0.68 -0.5 25,468 + GFF3834 0.84 -0.8 25,688 + GFF3835 0.34 -1.2 25,688 + GFF3835 0.34 -0.4 25,689 - GFF3835 0.34 +0.5 25,689 - GFF3835 0.34 +0.1 25,689 - GFF3835 0.34 -0.2 26,001 - -1.5 26,281 + -1.1 26,281 + -0.9 26,308 + -0.4 26,308 + -0.5 26,308 - -0.1 26,309 - -0.5 26,309 - -0.3 26,309 - +0.0 26,323 + -1.2 26,323 + -2.0 26,323 + -0.7 26,324 - +0.1 26,324 - -0.7 26,345 - -0.6 26,485 + +0.1 26,486 - -1.4 26,486 - -0.2 26,530 + -2.2 26,531 - +1.4 27,067 + GFF3836 0.13 -0.1 27,067 + GFF3836 0.13 -0.3 27,067 + GFF3836 0.13 -0.5 27,067 + GFF3836 0.13 +0.5 27,068 - GFF3836 0.13 +0.1 27,068 - GFF3836 0.13 +0.3 27,068 - GFF3836 0.13 -1.1 27,070 + GFF3836 0.13 -1.1 27,070 + GFF3836 0.13 -1.3 27,071 - GFF3836 0.13 -0.8 27,071 - GFF3836 0.13 +0.9 27,071 - GFF3836 0.13 +0.2 27,160 + GFF3836 0.14 -0.5 27,176 - GFF3836 0.14 -0.6 27,421 + GFF3836 0.17 +0.2 27,809 + GFF3836 0.22 -0.3 28,053 - GFF3836 0.25 +1.0 28,053 - GFF3836 0.25 +0.4 28,054 + GFF3836 0.25 -0.3 28,054 + GFF3836 0.25 -0.2 28,054 + GFF3836 0.25 -0.6 28,054 + GFF3836 0.25 -0.9 28,054 + GFF3836 0.25 +0.1 28,055 - GFF3836 0.25 +1.1 28,055 - GFF3836 0.25 -0.7 28,055 - GFF3836 0.25 +0.1 28,055 - GFF3836 0.25 -0.5 28,055 - GFF3836 0.25 -0.4 28,153 + GFF3836 0.26 +0.0 28,153 + GFF3836 0.26 -2.3 28,153 + GFF3836 0.26 -0.0 28,154 - GFF3836 0.26 -3.0 28,154 - GFF3836 0.26 +0.7 28,154 - GFF3836 0.26 -0.5 28,154 - GFF3836 0.26 -0.8 28,154 - GFF3836 0.26 +0.4 28,307 + GFF3836 0.28 -0.6 28,308 - GFF3836 0.28 -0.5 28,585 + GFF3836 0.31 +0.2 28,585 + GFF3836 0.31 -0.2 28,585 + GFF3836 0.31 -1.1 28,586 - GFF3836 0.31 -0.2 28,586 - GFF3836 0.31 -0.8 28,586 - GFF3836 0.31 -1.0 28,681 + GFF3836 0.33 -0.6 28,681 + GFF3836 0.33 -1.7 28,682 - GFF3836 0.33 -0.3 28,895 - GFF3836 0.35 -0.1 28,895 - GFF3836 0.35 +0.2 29,023 + GFF3836 0.37 -0.9 29,023 + GFF3836 0.37 +1.1 29,024 - GFF3836 0.37 -0.6 29,024 - GFF3836 0.37 +0.5 29,024 - GFF3836 0.37 -0.2 29,024 - GFF3836 0.37 +0.3 29,440 + GFF3836 0.42 -0.6 29,440 + GFF3836 0.42 -1.1 29,441 - GFF3836 0.42 +0.2 29,541 + GFF3836 0.43 -1.0 29,542 - GFF3836 0.43 +0.7 29,542 - GFF3836 0.43 +0.9 29,674 + GFF3836 0.45 -1.3 29,674 + GFF3836 0.45 -1.0 29,675 - GFF3836 0.45 -0.4 29,675 - GFF3836 0.45 -0.9 29,675 - GFF3836 0.45 -1.0 29,689 + GFF3836 0.45 +1.1 29,690 - GFF3836 0.45 +0.8 29,782 + GFF3836 0.46 +2.1 30,214 + GFF3836 0.51 -0.4 30,283 + GFF3836 0.52 -1.1 30,289 + GFF3836 0.52 -1.2 30,317 - GFF3836 0.53 -0.4 30,448 + GFF3836 0.54 -0.6 30,448 + GFF3836 0.54 -0.9 30,448 + GFF3836 0.54 -0.7 30,449 - GFF3836 0.54 -0.4 30,449 - GFF3836 0.54 +0.9 30,601 + GFF3836 0.56 +0.0 30,601 + GFF3836 0.56 -1.5 30,602 - GFF3836 0.56 -0.8 30,604 + GFF3836 0.56 -0.2 30,604 + GFF3836 0.56 +0.3 30,604 + GFF3836 0.56 +0.3 30,605 - GFF3836 0.56 -0.6 30,605 - GFF3836 0.56 +0.6 30,605 - GFF3836 0.56 -0.4 30,605 - GFF3836 0.56 +0.3 30,605 - GFF3836 0.56 -0.2 30,605 - GFF3836 0.56 -0.2 30,670 + GFF3836 0.57 +0.4 30,670 + GFF3836 0.57 +0.1 30,670 + GFF3836 0.57 +1.2 30,671 - GFF3836 0.57 +0.4 30,838 + GFF3836 0.59 -0.1 30,838 + GFF3836 0.59 -0.1 30,838 + GFF3836 0.59 -0.1 30,838 + GFF3836 0.59 +0.7 30,838 + GFF3836 0.59 -0.6 30,839 - GFF3836 0.59 +0.4 30,839 - GFF3836 0.59 -0.9 30,839 - GFF3836 0.59 -0.3 30,839 - GFF3836 0.59 -0.7 30,874 + GFF3836 0.59 -0.6 31,003 + GFF3836 0.61 +0.2 31,003 + GFF3836 0.61 -0.9 31,003 + GFF3836 0.61 -0.1 31,003 + GFF3836 0.61 -0.1 31,003 + GFF3836 0.61 +0.2 31,003 + GFF3836 0.61 -0.1 31,004 - GFF3836 0.61 -0.6 31,004 - GFF3836 0.61 -0.1 31,004 - GFF3836 0.61 +0.7 31,004 - GFF3836 0.61 +0.1 31,004 - GFF3836 0.61 -0.3 31,004 - GFF3836 0.61 -1.4 31,004 - GFF3836 0.61 -0.3 31,004 - GFF3836 0.61 +0.7 31,147 + GFF3836 0.63 -0.1 31,148 - GFF3836 0.63 -1.4 31,148 - GFF3836 0.63 -0.0 32,021 - GFF3836 0.73 +1.1 32,021 - GFF3836 0.73 -0.6 32,021 - GFF3836 0.73 +0.6 32,021 - GFF3836 0.73 -1.1 32,044 + GFF3836 0.74 +0.4 32,269 + GFF3836 0.77 -0.4 32,269 + GFF3836 0.77 -1.3 32,269 + GFF3836 0.77 -0.0 32,270 - GFF3836 0.77 +1.7 32,270 - GFF3836 0.77 -0.2 32,470 + GFF3836 0.79 -1.8 32,470 + GFF3836 0.79 -0.2 32,471 - GFF3836 0.79 -1.4 32,471 - GFF3836 0.79 -0.8 32,471 - GFF3836 0.79 -0.3 32,818 - GFF3836 0.83 +0.3 32,902 + GFF3836 0.84 -0.6 32,902 + GFF3836 0.84 +0.2 32,902 + GFF3836 0.84 -0.2 32,902 + GFF3836 0.84 -0.1 32,903 - GFF3836 0.84 +0.5 32,903 - GFF3836 0.84 -0.1 32,903 - GFF3836 0.84 -0.9 33,028 + GFF3836 0.86 +0.1 33,028 + GFF3836 0.86 +1.4 33,028 + GFF3836 0.86 +1.5 33,029 - GFF3836 0.86 -0.6 33,029 - GFF3836 0.86 -1.1 33,029 - GFF3836 0.86 +0.7 33,029 - GFF3836 0.86 +0.1 33,031 + GFF3836 0.86 +2.1 33,031 + GFF3836 0.86 +2.3 33,244 - GFF3836 0.88 +2.7 33,454 + +1.2 33,454 + +1.4 33,454 + -0.1 33,454 + -0.9 33,454 + +0.9 33,454 + -1.6 33,454 + -0.5 33,455 - -1.0 33,455 - -0.2 33,455 - -0.6 33,455 - +0.3 33,490 + -0.9 33,491 - -0.7 33,612 + -0.7 33,612 + +1.1 33,613 - +0.2 33,676 + +0.1 33,736 + -0.1 33,736 + -0.3 33,736 + +0.0 33,737 + -0.5 33,737 - +0.0 33,737 - -1.6 33,737 - +0.4 33,737 - -0.4 33,754 + -1.1 33,755 - -0.9 33,755 - +1.1 33,755 - -0.3 33,755 - +0.1 33,809 - -0.8 33,811 + +0.8 33,811 + -0.4 33,811 + -0.3 33,811 + +0.1 33,811 + -0.6 33,812 - -1.0 33,812 - -0.8 33,812 - +1.2 33,812 - +0.1 33,901 + -0.8 33,902 - +0.4 33,902 - +0.6 33,902 - +0.3 33,902 - -0.4 33,902 - -0.5 33,932 - -1.3 34,378 + +0.4 34,416 + -0.0 34,476 + +0.0 34,477 - +1.7 34,477 - -0.8 34,486 + -0.3 34,487 - +0.2 34,515 + -0.2 34,516 - -0.8 34,516 - -0.2 34,516 - -0.4 34,699 + -2.3 34,699 + +0.7 34,699 + -3.2 34,700 - -1.1 34,700 - -4.1 34,862 - GFF3838 0.10 -1.6 34,904 - GFF3838 0.12 -2.1 34,945 + GFF3838 0.13 -1.5 34,945 + GFF3838 0.13 -3.0 34,945 + GFF3838 0.13 -0.9 34,945 + GFF3838 0.13 -3.7 34,946 - GFF3838 0.13 -0.6 34,946 - GFF3838 0.13 -2.4 34,946 - GFF3838 0.13 -3.9
Or see this region's nucleotide sequence