Strain Fitness in Variovorax sp. SCN45 around GFF3612

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3611 and GFF3612 are separated by 34 nucleotidesGFF3612 and GFF3613 are separated by 7 nucleotidesGFF3613 and GFF3614 are separated by 8 nucleotides GFF3611 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 124,379 to 126,235 GFF3611 GFF3612 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 126,270 to 127,436 GFF3612 GFF3613 - Protein of unknown function DUF55, at 127,444 to 127,917 GFF3613 GFF3614 - UPF0056 inner membrane protein YchE, at 127,926 to 128,579 GFF3614 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1at 125.273 kb on + strand, within GFF3611at 125.274 kb on - strand, within GFF3611at 125.327 kb on + strand, within GFF3611at 125.328 kb on - strand, within GFF3611at 125.328 kb on - strand, within GFF3611at 125.328 kb on - strand, within GFF3611at 125.525 kb on + strand, within GFF3611at 125.525 kb on + strand, within GFF3611at 125.526 kb on - strand, within GFF3611at 125.526 kb on - strand, within GFF3611at 125.526 kb on - strand, within GFF3611at 125.643 kb on - strand, within GFF3611at 125.900 kb on + strand, within GFF3611at 125.900 kb on + strand, within GFF3611at 125.900 kb on + strand, within GFF3611at 125.901 kb on - strand, within GFF3611at 125.901 kb on - strand, within GFF3611at 125.939 kb on + strand, within GFF3611at 125.940 kb on - strand, within GFF3611at 125.940 kb on - strand, within GFF3611at 126.017 kb on + strand, within GFF3611at 126.018 kb on - strand, within GFF3611at 126.203 kb on + strandat 126.204 kb on - strandat 126.204 kb on - strandat 126.204 kb on - strandat 126.216 kb on + strandat 126.216 kb on + strandat 126.216 kb on + strandat 126.217 kb on - strandat 126.217 kb on - strandat 126.217 kb on - strandat 126.217 kb on - strandat 126.227 kb on + strandat 126.228 kb on - strandat 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.678 kb on + strand, within GFF3612at 126.679 kb on - strand, within GFF3612at 126.679 kb on - strand, within GFF3612at 126.702 kb on + strand, within GFF3612at 126.702 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.723 kb on + strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.792 kb on + strand, within GFF3612at 126.793 kb on - strand, within GFF3612at 127.045 kb on - strand, within GFF3612at 127.045 kb on - strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.120 kb on - strand, within GFF3612at 127.120 kb on - strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.165 kb on - strand, within GFF3612at 127.165 kb on - strand, within GFF3612at 127.165 kb on - strand, within GFF3612at 127.207 kb on - strand, within GFF3612at 127.212 kb on + strand, within GFF3612at 127.213 kb on - strand, within GFF3612at 127.341 kb on + strandat 127.341 kb on + strandat 127.341 kb on + strandat 127.341 kb on + strandat 127.342 kb on - strandat 127.342 kb on - strandat 127.342 kb on - strandat 127.342 kb on - strandat 127.422 kb on + strandat 127.422 kb on + strandat 127.422 kb on + strandat 127.423 kb on - strandat 127.423 kb on - strandat 127.423 kb on - strandat 127.423 kb on - strandat 127.423 kb on - strandat 127.558 kb on + strand, within GFF3613at 127.558 kb on + strand, within GFF3613at 127.558 kb on + strand, within GFF3613at 127.558 kb on + strand, within GFF3613at 127.558 kb on + strand, within GFF3613at 127.559 kb on - strand, within GFF3613at 127.559 kb on - strand, within GFF3613at 127.615 kb on + strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.616 kb on - strand, within GFF3613at 127.711 kb on + strand, within GFF3613at 127.712 kb on - strand, within GFF3613at 127.712 kb on - strand, within GFF3613at 127.714 kb on + strand, within GFF3613at 127.714 kb on + strand, within GFF3613at 127.714 kb on + strand, within GFF3613at 127.715 kb on - strand, within GFF3613at 127.715 kb on - strand, within GFF3613at 127.715 kb on - strand, within GFF3613at 127.945 kb on - strandat 128.114 kb on - strand, within GFF3614at 128.161 kb on + strand, within GFF3614

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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125,273 + GFF3611 0.48 -0.5
125,274 - GFF3611 0.48 -1.9
125,327 + GFF3611 0.51 -2.5
125,328 - GFF3611 0.51 +0.3
125,328 - GFF3611 0.51 -0.1
125,328 - GFF3611 0.51 -0.2
125,525 + GFF3611 0.62 -1.5
125,525 + GFF3611 0.62 -0.5
125,526 - GFF3611 0.62 -0.5
125,526 - GFF3611 0.62 +0.3
125,526 - GFF3611 0.62 +0.2
125,643 - GFF3611 0.68 -0.2
125,900 + GFF3611 0.82 +0.4
125,900 + GFF3611 0.82 -0.4
125,900 + GFF3611 0.82 -0.1
125,901 - GFF3611 0.82 -1.0
125,901 - GFF3611 0.82 +0.2
125,939 + GFF3611 0.84 -0.4
125,940 - GFF3611 0.84 -0.1
125,940 - GFF3611 0.84 +0.1
126,017 + GFF3611 0.88 -0.7
126,018 - GFF3611 0.88 +0.2
126,203 + -0.8
126,204 - -0.3
126,204 - -0.3
126,204 - -0.4
126,216 + -1.9
126,216 + +0.4
126,216 + +0.6
126,217 - -1.5
126,217 - -0.5
126,217 - +0.5
126,217 - -0.3
126,227 + -0.6
126,228 - -1.4
126,648 + GFF3612 0.32 -0.5
126,648 + GFF3612 0.32 -0.3
126,648 + GFF3612 0.32 -0.3
126,648 + GFF3612 0.32 -0.4
126,648 + GFF3612 0.32 -1.4
126,648 + GFF3612 0.32 -0.2
126,648 + GFF3612 0.32 +0.2
126,649 - GFF3612 0.32 +0.6
126,649 - GFF3612 0.32 -0.6
126,649 - GFF3612 0.32 -0.1
126,649 - GFF3612 0.32 +0.2
126,649 - GFF3612 0.32 -0.8
126,649 - GFF3612 0.32 +0.7
126,649 - GFF3612 0.32 -1.0
126,678 + GFF3612 0.35 -0.5
126,679 - GFF3612 0.35 -2.0
126,679 - GFF3612 0.35 +0.8
126,702 + GFF3612 0.37 -0.2
126,702 + GFF3612 0.37 +0.9
126,720 + GFF3612 0.39 +1.5
126,720 + GFF3612 0.39 -0.1
126,720 + GFF3612 0.39 -0.5
126,720 + GFF3612 0.39 -0.2
126,720 + GFF3612 0.39 -0.3
126,720 + GFF3612 0.39 -0.4
126,721 - GFF3612 0.39 -0.4
126,721 - GFF3612 0.39 +0.1
126,721 - GFF3612 0.39 -0.7
126,721 - GFF3612 0.39 +0.0
126,721 - GFF3612 0.39 -0.9
126,723 + GFF3612 0.39 -0.7
126,724 - GFF3612 0.39 -0.8
126,724 - GFF3612 0.39 -0.5
126,724 - GFF3612 0.39 -1.5
126,724 - GFF3612 0.39 -0.6
126,792 + GFF3612 0.45 -0.8
126,793 - GFF3612 0.45 +0.4
127,045 - GFF3612 0.66 -1.1
127,045 - GFF3612 0.66 -0.4
127,092 + GFF3612 0.70 -0.8
127,092 + GFF3612 0.70 -0.9
127,092 + GFF3612 0.70 -0.0
127,092 + GFF3612 0.70 -0.5
127,093 - GFF3612 0.71 -1.1
127,093 - GFF3612 0.71 +0.4
127,093 - GFF3612 0.71 +0.1
127,093 - GFF3612 0.71 -0.1
127,093 - GFF3612 0.71 +0.0
127,093 - GFF3612 0.71 -0.1
127,093 - GFF3612 0.71 +0.0
127,120 - GFF3612 0.73 +0.2
127,120 - GFF3612 0.73 +0.0
127,164 + GFF3612 0.77 -0.2
127,164 + GFF3612 0.77 -0.1
127,164 + GFF3612 0.77 -0.2
127,164 + GFF3612 0.77 -1.0
127,164 + GFF3612 0.77 -0.3
127,164 + GFF3612 0.77 +0.5
127,164 + GFF3612 0.77 -1.6
127,165 - GFF3612 0.77 -0.7
127,165 - GFF3612 0.77 -0.3
127,165 - GFF3612 0.77 -0.7
127,207 - GFF3612 0.80 -0.2
127,212 + GFF3612 0.81 -0.6
127,213 - GFF3612 0.81 -1.2
127,341 + -0.6
127,341 + -0.2
127,341 + -0.3
127,341 + +0.9
127,342 - +0.2
127,342 - -0.1
127,342 - +0.1
127,342 - -0.4
127,422 + -0.8
127,422 + +0.1
127,422 + -0.1
127,423 - -0.5
127,423 - -0.1
127,423 - +0.0
127,423 - -0.3
127,423 - -0.4
127,558 + GFF3613 0.24 -0.4
127,558 + GFF3613 0.24 +0.6
127,558 + GFF3613 0.24 +1.1
127,558 + GFF3613 0.24 -0.6
127,558 + GFF3613 0.24 -1.0
127,559 - GFF3613 0.24 -0.8
127,559 - GFF3613 0.24 +0.9
127,615 + GFF3613 0.36 +0.3
127,616 - GFF3613 0.36 -0.3
127,616 - GFF3613 0.36 -0.2
127,616 - GFF3613 0.36 +0.1
127,616 - GFF3613 0.36 -0.6
127,616 - GFF3613 0.36 +0.7
127,616 - GFF3613 0.36 +0.0
127,711 + GFF3613 0.56 -0.5
127,712 - GFF3613 0.57 -0.3
127,712 - GFF3613 0.57 -0.5
127,714 + GFF3613 0.57 -0.1
127,714 + GFF3613 0.57 -0.2
127,714 + GFF3613 0.57 -1.2
127,715 - GFF3613 0.57 -1.5
127,715 - GFF3613 0.57 +0.9
127,715 - GFF3613 0.57 -0.0
127,945 - +0.4
128,114 - GFF3614 0.29 +0.4
128,161 + GFF3614 0.36 -1.1

Or see this region's nucleotide sequence