Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3468 and GFF3469 are separated by 13 nucleotides GFF3469 and GFF3470 overlap by 4 nucleotides GFF3470 and GFF3471 are separated by 91 nucleotides
GFF3468 - Nucleoside-diphosphate-sugar epimerases, at 288,865 to 289,857
GFF3468
GFF3469 - Glutaminase (EC 3.5.1.2), at 289,871 to 290,824
GFF3469
GFF3470 - Permease of the drug/metabolite transporter (DMT) superfamily, at 290,821 to 291,729
GFF3470
GFF3471 - hypothetical protein, at 291,821 to 292,321
GFF3471
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 289.125 kb on - strand, within GFF3468 at 289.125 kb on - strand, within GFF3468 at 289.198 kb on + strand, within GFF3468 at 289.199 kb on - strand, within GFF3468 at 289.199 kb on - strand, within GFF3468 at 289.199 kb on - strand, within GFF3468 at 289.429 kb on + strand, within GFF3468 at 289.429 kb on + strand, within GFF3468 at 289.429 kb on + strand, within GFF3468 at 289.429 kb on + strand, within GFF3468 at 289.430 kb on - strand, within GFF3468 at 289.465 kb on + strand, within GFF3468 at 289.466 kb on - strand, within GFF3468 at 289.466 kb on - strand, within GFF3468 at 289.466 kb on - strand, within GFF3468 at 289.708 kb on + strand, within GFF3468 at 289.709 kb on - strand, within GFF3468 at 289.709 kb on - strand, within GFF3468 at 290.067 kb on + strand, within GFF3469 at 290.067 kb on + strand, within GFF3469 at 290.068 kb on - strand, within GFF3469 at 290.068 kb on - strand, within GFF3469 at 290.068 kb on - strand, within GFF3469 at 290.068 kb on - strand, within GFF3469 at 290.226 kb on + strand, within GFF3469 at 290.226 kb on + strand, within GFF3469 at 290.226 kb on + strand, within GFF3469 at 290.226 kb on + strand, within GFF3469 at 290.227 kb on - strand, within GFF3469 at 290.721 kb on + strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.836 kb on + strand at 290.836 kb on + strand at 291.023 kb on + strand, within GFF3470 at 291.023 kb on + strand, within GFF3470 at 291.024 kb on - strand, within GFF3470 at 291.024 kb on - strand, within GFF3470 at 291.024 kb on - strand, within GFF3470 at 291.155 kb on + strand, within GFF3470 at 291.155 kb on + strand, within GFF3470 at 291.155 kb on + strand, within GFF3470 at 291.155 kb on + strand, within GFF3470 at 291.156 kb on - strand, within GFF3470 at 291.156 kb on - strand, within GFF3470 at 291.156 kb on - strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.414 kb on - strand, within GFF3470 at 291.414 kb on - strand, within GFF3470 at 291.414 kb on - strand, within GFF3470 at 291.553 kb on + strand, within GFF3470 at 291.553 kb on + strand, within GFF3470 at 291.553 kb on + strand, within GFF3470 at 291.554 kb on - strand, within GFF3470 at 291.776 kb on + strand at 291.777 kb on - strand at 291.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 289,125 - GFF3468 0.26 +0.3 289,125 - GFF3468 0.26 +0.2 289,198 + GFF3468 0.34 -0.2 289,199 - GFF3468 0.34 +0.8 289,199 - GFF3468 0.34 -0.3 289,199 - GFF3468 0.34 +0.4 289,429 + GFF3468 0.57 -0.1 289,429 + GFF3468 0.57 -1.3 289,429 + GFF3468 0.57 -0.9 289,429 + GFF3468 0.57 +0.1 289,430 - GFF3468 0.57 -0.0 289,465 + GFF3468 0.60 -1.1 289,466 - GFF3468 0.61 -1.1 289,466 - GFF3468 0.61 -0.2 289,466 - GFF3468 0.61 -2.2 289,708 + GFF3468 0.85 -0.1 289,709 - GFF3468 0.85 +0.2 289,709 - GFF3468 0.85 +0.8 290,067 + GFF3469 0.21 +0.2 290,067 + GFF3469 0.21 +0.2 290,068 - GFF3469 0.21 -0.7 290,068 - GFF3469 0.21 +0.2 290,068 - GFF3469 0.21 +0.1 290,068 - GFF3469 0.21 +0.6 290,226 + GFF3469 0.37 +0.1 290,226 + GFF3469 0.37 +0.7 290,226 + GFF3469 0.37 +0.3 290,226 + GFF3469 0.37 +0.6 290,227 - GFF3469 0.37 +0.2 290,721 + GFF3469 0.89 +1.2 290,722 - GFF3469 0.89 -1.3 290,722 - GFF3469 0.89 +0.2 290,722 - GFF3469 0.89 +1.0 290,722 - GFF3469 0.89 +0.1 290,722 - GFF3469 0.89 +0.4 290,722 - GFF3469 0.89 -0.7 290,722 - GFF3469 0.89 +0.7 290,722 - GFF3469 0.89 +0.1 290,722 - GFF3469 0.89 +1.3 290,722 - GFF3469 0.89 -0.2 290,836 + -0.4 290,836 + -1.3 291,023 + GFF3470 0.22 -1.8 291,023 + GFF3470 0.22 -1.7 291,024 - GFF3470 0.22 +0.3 291,024 - GFF3470 0.22 -1.9 291,024 - GFF3470 0.22 +0.0 291,155 + GFF3470 0.37 +4.3 291,155 + GFF3470 0.37 +0.2 291,155 + GFF3470 0.37 -0.7 291,155 + GFF3470 0.37 -0.7 291,156 - GFF3470 0.37 -0.3 291,156 - GFF3470 0.37 -0.5 291,156 - GFF3470 0.37 -0.5 291,413 + GFF3470 0.65 -1.1 291,413 + GFF3470 0.65 +0.0 291,413 + GFF3470 0.65 -0.7 291,413 + GFF3470 0.65 +1.2 291,413 + GFF3470 0.65 +2.0 291,414 - GFF3470 0.65 -0.3 291,414 - GFF3470 0.65 -0.1 291,414 - GFF3470 0.65 +0.8 291,553 + GFF3470 0.81 -0.6 291,553 + GFF3470 0.81 +0.8 291,553 + GFF3470 0.81 -2.1 291,554 - GFF3470 0.81 -0.4 291,776 + +0.6 291,777 - +0.1 291,795 - +0.6
Or see this region's nucleotide sequence