Strain Fitness in Variovorax sp. SCN45 around GFF327

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF326 and GFF327 are separated by 10 nucleotidesGFF327 and GFF328 are separated by 44 nucleotidesGFF328 and GFF329 overlap by 4 nucleotides GFF326 - Polysaccharide deacetylase, caspase activity, at 358,434 to 361,211 GFF326 GFF327 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 361,222 to 362,199 GFF327 GFF328 - hypothetical protein, at 362,244 to 362,939 GFF328 GFF329 - Nucleoside ABC transporter, ATP-binding protein, at 362,936 to 364,537 GFF329 Position (kb) 361 362 363Strain fitness (log2 ratio) -2 -1 0 1 2at 360.276 kb on + strand, within GFF326at 360.276 kb on + strand, within GFF326at 360.276 kb on + strand, within GFF326at 360.276 kb on + strand, within GFF326at 360.277 kb on - strand, within GFF326at 360.277 kb on - strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.510 kb on + strand, within GFF326at 360.511 kb on - strand, within GFF326at 360.511 kb on - strand, within GFF326at 360.858 kb on + strand, within GFF326at 360.859 kb on - strand, within GFF326at 360.859 kb on - strand, within GFF326at 360.873 kb on + strand, within GFF326at 360.874 kb on - strand, within GFF326at 360.958 kb on - strandat 360.958 kb on - strandat 361.038 kb on + strandat 361.038 kb on + strandat 361.038 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.059 kb on + strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.060 kb on - strandat 361.098 kb on + strandat 361.098 kb on + strandat 361.098 kb on + strandat 361.099 kb on - strandat 361.099 kb on - strandat 361.324 kb on + strand, within GFF327at 361.324 kb on + strand, within GFF327at 361.324 kb on + strand, within GFF327at 361.324 kb on + strand, within GFF327at 361.325 kb on - strand, within GFF327at 361.666 kb on + strand, within GFF327at 361.667 kb on - strand, within GFF327at 361.667 kb on - strand, within GFF327at 361.708 kb on + strand, within GFF327at 361.708 kb on + strand, within GFF327at 361.708 kb on + strand, within GFF327at 361.709 kb on - strand, within GFF327at 361.709 kb on - strand, within GFF327at 361.709 kb on - strand, within GFF327at 361.975 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 362.050 kb on + strand, within GFF327at 362.051 kb on - strand, within GFF327at 362.051 kb on - strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.227 kb on + strandat 362.228 kb on - strandat 362.320 kb on - strand, within GFF328at 362.343 kb on + strand, within GFF328at 362.344 kb on - strand, within GFF328at 362.732 kb on - strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.795 kb on + strand, within GFF328at 362.889 kb on - strandat 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.099 kb on - strand, within GFF329

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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360,276 + GFF326 0.66 -0.2
360,276 + GFF326 0.66 -0.0
360,276 + GFF326 0.66 -1.4
360,276 + GFF326 0.66 -0.8
360,277 - GFF326 0.66 -0.5
360,277 - GFF326 0.66 -1.9
360,510 + GFF326 0.75 -0.2
360,510 + GFF326 0.75 -0.7
360,510 + GFF326 0.75 -0.5
360,510 + GFF326 0.75 +1.0
360,510 + GFF326 0.75 +0.0
360,511 - GFF326 0.75 +0.6
360,511 - GFF326 0.75 -0.5
360,858 + GFF326 0.87 -1.8
360,859 - GFF326 0.87 -0.7
360,859 - GFF326 0.87 +2.4
360,873 + GFF326 0.88 -1.2
360,874 - GFF326 0.88 +0.8
360,958 - +0.1
360,958 - -0.7
361,038 + -0.0
361,038 + -0.2
361,038 + -0.1
361,059 + -1.3
361,059 + -0.6
361,059 + -0.6
361,059 + +1.4
361,059 + -0.5
361,059 + -0.8
361,059 + -0.2
361,059 + +0.3
361,059 + +0.5
361,059 + -0.4
361,059 + +0.6
361,060 - -0.4
361,060 - -0.1
361,060 - +0.4
361,060 - -0.6
361,060 - +1.7
361,060 - -0.7
361,060 - -1.4
361,060 - +0.2
361,060 - -0.4
361,060 - +0.9
361,098 + -0.9
361,098 + -0.8
361,098 + -0.5
361,099 - +1.7
361,099 - +0.6
361,324 + GFF327 0.10 +0.2
361,324 + GFF327 0.10 -0.6
361,324 + GFF327 0.10 +0.6
361,324 + GFF327 0.10 -0.2
361,325 - GFF327 0.11 -0.1
361,666 + GFF327 0.45 -1.4
361,667 - GFF327 0.46 +0.3
361,667 - GFF327 0.46 +0.0
361,708 + GFF327 0.50 +0.6
361,708 + GFF327 0.50 -0.4
361,708 + GFF327 0.50 +0.4
361,709 - GFF327 0.50 +0.7
361,709 - GFF327 0.50 +0.1
361,709 - GFF327 0.50 -1.3
361,975 + GFF327 0.77 -0.2
361,984 + GFF327 0.78 +0.8
361,984 + GFF327 0.78 -0.5
361,984 + GFF327 0.78 +0.2
361,984 + GFF327 0.78 -0.0
361,984 + GFF327 0.78 -0.5
361,984 + GFF327 0.78 +0.4
361,985 - GFF327 0.78 -0.3
361,985 - GFF327 0.78 -0.8
361,985 - GFF327 0.78 +0.5
361,990 + GFF327 0.79 -0.4
361,990 + GFF327 0.79 +1.4
361,990 + GFF327 0.79 -0.1
361,990 + GFF327 0.79 +1.7
361,990 + GFF327 0.79 -1.0
361,990 + GFF327 0.79 +0.3
361,990 + GFF327 0.79 -0.5
361,990 + GFF327 0.79 +2.0
361,990 + GFF327 0.79 -0.6
361,990 + GFF327 0.79 -0.8
361,990 + GFF327 0.79 -0.0
361,990 + GFF327 0.79 -0.2
361,990 + GFF327 0.79 -0.2
361,990 + GFF327 0.79 -0.5
361,990 + GFF327 0.79 +1.4
361,991 - GFF327 0.79 -0.9
361,991 - GFF327 0.79 +1.4
361,991 - GFF327 0.79 +1.2
361,991 - GFF327 0.79 -0.0
361,991 - GFF327 0.79 +0.5
361,991 - GFF327 0.79 -0.5
361,991 - GFF327 0.79 +0.1
361,991 - GFF327 0.79 +0.6
361,991 - GFF327 0.79 +1.1
361,991 - GFF327 0.79 +0.8
361,991 - GFF327 0.79 -0.9
362,050 + GFF327 0.85 +0.0
362,051 - GFF327 0.85 +0.3
362,051 - GFF327 0.85 +0.3
362,068 + GFF327 0.87 +0.8
362,068 + GFF327 0.87 -0.4
362,068 + GFF327 0.87 -0.4
362,068 + GFF327 0.87 -1.3
362,068 + GFF327 0.87 -0.4
362,068 + GFF327 0.87 +0.1
362,068 + GFF327 0.87 +0.2
362,069 - GFF327 0.87 -0.4
362,069 - GFF327 0.87 -0.4
362,069 - GFF327 0.87 -0.9
362,227 + -0.1
362,228 - -1.9
362,320 - GFF328 0.11 +0.1
362,343 + GFF328 0.14 +2.1
362,344 - GFF328 0.14 +0.2
362,732 - GFF328 0.70 -1.8
362,748 + GFF328 0.72 +1.3
362,748 + GFF328 0.72 -0.6
362,748 + GFF328 0.72 -0.0
362,748 + GFF328 0.72 -1.0
362,748 + GFF328 0.72 -1.2
362,748 + GFF328 0.72 +1.8
362,748 + GFF328 0.72 -0.6
362,748 + GFF328 0.72 +0.1
362,748 + GFF328 0.72 -0.4
362,748 + GFF328 0.72 -0.7
362,748 + GFF328 0.72 +0.4
362,748 + GFF328 0.72 -1.0
362,749 - GFF328 0.73 -0.8
362,749 - GFF328 0.73 +0.1
362,749 - GFF328 0.73 -0.1
362,749 - GFF328 0.73 +0.5
362,749 - GFF328 0.73 +1.4
362,749 - GFF328 0.73 -0.5
362,749 - GFF328 0.73 -0.1
362,749 - GFF328 0.73 +0.1
362,749 - GFF328 0.73 +0.1
362,795 + GFF328 0.79 -1.0
362,889 - +0.1
363,098 + GFF329 0.10 -0.4
363,098 + GFF329 0.10 +0.0
363,098 + GFF329 0.10 -1.9
363,098 + GFF329 0.10 -0.5
363,098 + GFF329 0.10 +0.9
363,098 + GFF329 0.10 +0.4
363,099 - GFF329 0.10 +0.2
363,099 - GFF329 0.10 -1.1
363,099 - GFF329 0.10 -0.8
363,099 - GFF329 0.10 -0.5

Or see this region's nucleotide sequence