Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3156 and GFF3157 are separated by 62 nucleotides GFF3157 and GFF3158 are separated by 4 nucleotides GFF3158 and GFF3159 are separated by 110 nucleotides
GFF3156 - FIG00441737: hypothetical protein, at 592,124 to 593,281
GFF3156
GFF3157 - Sulfite dehydrogenase (quinone), membrane-anchor subunit SoeC (EC 1.8.5.6), at 593,344 to 594,276
GFF3157
GFF3158 - Sulfite dehydrogenase (quinone), iron-sulfur subunit SoeB (EC 1.8.5.6), at 594,281 to 595,009
GFF3158
GFF3159 - Sulfite dehydrogenase (quinone), molybdopterin-containing subunit SoeA (EC 1.8.5.6), at 595,120 to 598,065
GFF3159
Position (kb) 593
594
595 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 592.467 kb on + strand, within GFF3156 at 592.467 kb on + strand, within GFF3156 at 592.467 kb on + strand, within GFF3156 at 592.468 kb on - strand, within GFF3156 at 592.468 kb on - strand, within GFF3156 at 592.468 kb on - strand, within GFF3156 at 592.615 kb on - strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.675 kb on - strand, within GFF3156 at 592.675 kb on - strand, within GFF3156 at 592.675 kb on - strand, within GFF3156 at 592.894 kb on - strand, within GFF3156 at 593.157 kb on - strand, within GFF3156 at 593.345 kb on + strand at 593.346 kb on - strand at 593.360 kb on + strand at 593.360 kb on + strand at 593.360 kb on + strand at 593.361 kb on - strand at 593.361 kb on - strand at 593.363 kb on + strand at 593.363 kb on + strand at 593.364 kb on - strand at 593.885 kb on + strand, within GFF3157 at 593.885 kb on + strand, within GFF3157 at 593.903 kb on + strand, within GFF3157 at 593.924 kb on + strand, within GFF3157 at 593.924 kb on + strand, within GFF3157 at 593.924 kb on + strand, within GFF3157 at 594.325 kb on - strand at 594.325 kb on - strand at 594.499 kb on - strand, within GFF3158 at 594.612 kb on + strand, within GFF3158 at 594.753 kb on + strand, within GFF3158 at 594.798 kb on + strand, within GFF3158 at 594.956 kb on - strand at 595.145 kb on + strand at 595.212 kb on - strand at 595.212 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 592,467 + GFF3156 0.30 -0.9 592,467 + GFF3156 0.30 -0.3 592,467 + GFF3156 0.30 -0.1 592,468 - GFF3156 0.30 -0.9 592,468 - GFF3156 0.30 -1.3 592,468 - GFF3156 0.30 +0.9 592,615 - GFF3156 0.42 -1.6 592,674 + GFF3156 0.47 -1.7 592,674 + GFF3156 0.47 -0.5 592,674 + GFF3156 0.47 -1.5 592,674 + GFF3156 0.47 -0.6 592,675 - GFF3156 0.48 -0.0 592,675 - GFF3156 0.48 -0.2 592,675 - GFF3156 0.48 +0.9 592,894 - GFF3156 0.66 -0.2 593,157 - GFF3156 0.89 +0.5 593,345 + +0.4 593,346 - +0.4 593,360 + +0.5 593,360 + +0.7 593,360 + -0.7 593,361 - -1.7 593,361 - -0.4 593,363 + -1.1 593,363 + -1.1 593,364 - -1.3 593,885 + GFF3157 0.58 -0.9 593,885 + GFF3157 0.58 -0.3 593,903 + GFF3157 0.60 -2.4 593,924 + GFF3157 0.62 -0.3 593,924 + GFF3157 0.62 -0.4 593,924 + GFF3157 0.62 +3.3 594,325 - -0.8 594,325 - +0.3 594,499 - GFF3158 0.30 +0.0 594,612 + GFF3158 0.45 +0.6 594,753 + GFF3158 0.65 -1.6 594,798 + GFF3158 0.71 +0.4 594,956 - +0.2 595,145 + +0.4 595,212 - -0.0 595,212 - -1.1
Or see this region's nucleotide sequence