Strain Fitness in Variovorax sp. SCN45 around GFF2993

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2992 and GFF2993 are separated by 8 nucleotidesGFF2993 and GFF2994 are separated by 115 nucleotides GFF2992 - BUG/TctC family periplasmic protein, at 423,116 to 424,105 GFF2992 GFF2993 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 424,114 to 425,544 GFF2993 GFF2994 - Transcriptional regulator, LysR family, at 425,660 to 426,610 GFF2994 Position (kb) 424 425 426Strain fitness (log2 ratio) -2 -1 0 1 2at 423.117 kb on + strandat 423.117 kb on + strandat 423.117 kb on + strandat 423.128 kb on - strandat 423.333 kb on + strand, within GFF2992at 423.334 kb on - strand, within GFF2992at 423.537 kb on + strand, within GFF2992at 423.537 kb on + strand, within GFF2992at 423.537 kb on + strand, within GFF2992at 423.537 kb on + strand, within GFF2992at 423.537 kb on + strand, within GFF2992at 423.537 kb on + strand, within GFF2992at 423.537 kb on + strand, within GFF2992at 423.537 kb on + strand, within GFF2992at 423.538 kb on - strand, within GFF2992at 423.538 kb on - strand, within GFF2992at 423.538 kb on - strand, within GFF2992at 423.538 kb on - strand, within GFF2992at 423.544 kb on + strand, within GFF2992at 423.544 kb on + strand, within GFF2992at 423.544 kb on + strand, within GFF2992at 423.544 kb on + strand, within GFF2992at 423.544 kb on + strand, within GFF2992at 423.625 kb on - strand, within GFF2992at 423.625 kb on - strand, within GFF2992at 423.798 kb on + strand, within GFF2992at 423.798 kb on + strand, within GFF2992at 423.799 kb on - strand, within GFF2992at 423.799 kb on - strand, within GFF2992at 423.799 kb on - strand, within GFF2992at 423.799 kb on - strand, within GFF2992at 424.277 kb on + strand, within GFF2993at 424.278 kb on - strand, within GFF2993at 424.465 kb on + strand, within GFF2993at 424.465 kb on + strand, within GFF2993at 424.465 kb on + strand, within GFF2993at 424.465 kb on + strand, within GFF2993at 424.465 kb on + strand, within GFF2993at 424.465 kb on + strand, within GFF2993at 424.466 kb on - strand, within GFF2993at 424.466 kb on - strand, within GFF2993at 425.090 kb on + strand, within GFF2993at 425.090 kb on + strand, within GFF2993at 425.091 kb on - strand, within GFF2993at 425.091 kb on - strand, within GFF2993at 425.183 kb on + strand, within GFF2993at 425.184 kb on - strand, within GFF2993at 425.273 kb on + strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.274 kb on - strand, within GFF2993at 425.411 kb on + strandat 425.411 kb on + strandat 425.412 kb on - strandat 425.412 kb on - strandat 425.508 kb on - strandat 425.581 kb on + strandat 425.581 kb on + strandat 425.581 kb on + strandat 425.581 kb on + strandat 425.581 kb on + strandat 425.582 kb on - strandat 425.582 kb on - strandat 425.582 kb on - strandat 425.625 kb on + strandat 425.626 kb on - strandat 425.626 kb on - strandat 425.626 kb on - strandat 425.626 kb on - strandat 425.747 kb on + strandat 425.747 kb on + strandat 425.747 kb on + strandat 425.747 kb on + strandat 425.747 kb on + strandat 425.747 kb on + strandat 425.747 kb on + strandat 425.747 kb on + strandat 425.747 kb on + strandat 425.747 kb on + strandat 425.748 kb on - strandat 426.110 kb on + strand, within GFF2994at 426.110 kb on + strand, within GFF2994at 426.110 kb on + strand, within GFF2994at 426.110 kb on + strand, within GFF2994at 426.110 kb on + strand, within GFF2994at 426.111 kb on - strand, within GFF2994at 426.111 kb on - strand, within GFF2994at 426.111 kb on - strand, within GFF2994at 426.111 kb on - strand, within GFF2994at 426.111 kb on - strand, within GFF2994at 426.111 kb on - strand, within GFF2994at 426.141 kb on + strand, within GFF2994at 426.142 kb on - strand, within GFF2994at 426.167 kb on + strand, within GFF2994at 426.167 kb on + strand, within GFF2994at 426.167 kb on + strand, within GFF2994at 426.168 kb on - strand, within GFF2994at 426.168 kb on - strand, within GFF2994at 426.168 kb on - strand, within GFF2994at 426.315 kb on - strand, within GFF2994

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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423,117 + +0.0
423,117 + -0.2
423,117 + +0.7
423,128 - -2.0
423,333 + GFF2992 0.22 +0.5
423,334 - GFF2992 0.22 -0.4
423,537 + GFF2992 0.43 -1.0
423,537 + GFF2992 0.43 -0.2
423,537 + GFF2992 0.43 -0.0
423,537 + GFF2992 0.43 -0.4
423,537 + GFF2992 0.43 -0.6
423,537 + GFF2992 0.43 +0.5
423,537 + GFF2992 0.43 -0.7
423,537 + GFF2992 0.43 +1.9
423,538 - GFF2992 0.43 +1.1
423,538 - GFF2992 0.43 -0.9
423,538 - GFF2992 0.43 -0.9
423,538 - GFF2992 0.43 -1.3
423,544 + GFF2992 0.43 +2.2
423,544 + GFF2992 0.43 +0.1
423,544 + GFF2992 0.43 -0.4
423,544 + GFF2992 0.43 +0.1
423,544 + GFF2992 0.43 -0.1
423,625 - GFF2992 0.51 -0.0
423,625 - GFF2992 0.51 -0.0
423,798 + GFF2992 0.69 +0.1
423,798 + GFF2992 0.69 -0.3
423,799 - GFF2992 0.69 +0.1
423,799 - GFF2992 0.69 +1.7
423,799 - GFF2992 0.69 -0.5
423,799 - GFF2992 0.69 -0.9
424,277 + GFF2993 0.11 -0.9
424,278 - GFF2993 0.11 -1.3
424,465 + GFF2993 0.25 -0.8
424,465 + GFF2993 0.25 -0.2
424,465 + GFF2993 0.25 +0.0
424,465 + GFF2993 0.25 -0.1
424,465 + GFF2993 0.25 -0.1
424,465 + GFF2993 0.25 +0.4
424,466 - GFF2993 0.25 +0.4
424,466 - GFF2993 0.25 +0.8
425,090 + GFF2993 0.68 +0.3
425,090 + GFF2993 0.68 -1.1
425,091 - GFF2993 0.68 -0.3
425,091 - GFF2993 0.68 -0.6
425,183 + GFF2993 0.75 +0.1
425,184 - GFF2993 0.75 +1.3
425,273 + GFF2993 0.81 -0.3
425,274 - GFF2993 0.81 -1.2
425,274 - GFF2993 0.81 +1.7
425,274 - GFF2993 0.81 -0.6
425,274 - GFF2993 0.81 -0.2
425,274 - GFF2993 0.81 +1.2
425,274 - GFF2993 0.81 +0.0
425,274 - GFF2993 0.81 -0.1
425,274 - GFF2993 0.81 +0.0
425,274 - GFF2993 0.81 -0.1
425,274 - GFF2993 0.81 +0.1
425,411 + +2.1
425,411 + -0.6
425,412 - +0.2
425,412 - -0.3
425,508 - +0.5
425,581 + -0.9
425,581 + -0.8
425,581 + -0.9
425,581 + -1.0
425,581 + -0.6
425,582 - -1.3
425,582 - -0.9
425,582 - -0.1
425,625 + -1.5
425,626 - -1.2
425,626 - -0.1
425,626 - -0.3
425,626 - +0.7
425,747 + -0.3
425,747 + +0.7
425,747 + +0.0
425,747 + +0.3
425,747 + +0.5
425,747 + +0.5
425,747 + +0.5
425,747 + +0.0
425,747 + +0.3
425,747 + -0.8
425,748 - -0.1
426,110 + GFF2994 0.47 +0.0
426,110 + GFF2994 0.47 +0.7
426,110 + GFF2994 0.47 -0.3
426,110 + GFF2994 0.47 -1.7
426,110 + GFF2994 0.47 +0.3
426,111 - GFF2994 0.47 -1.1
426,111 - GFF2994 0.47 -2.5
426,111 - GFF2994 0.47 +0.7
426,111 - GFF2994 0.47 +0.5
426,111 - GFF2994 0.47 +0.1
426,111 - GFF2994 0.47 -0.5
426,141 + GFF2994 0.51 +0.1
426,142 - GFF2994 0.51 +0.4
426,167 + GFF2994 0.53 +1.9
426,167 + GFF2994 0.53 -0.5
426,167 + GFF2994 0.53 +0.0
426,168 - GFF2994 0.53 +1.1
426,168 - GFF2994 0.53 +0.0
426,168 - GFF2994 0.53 +0.2
426,315 - GFF2994 0.69 -1.0

Or see this region's nucleotide sequence