Strain Fitness in Variovorax sp. SCN45 around GFF2969

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2967 and GFF2968 are separated by 36 nucleotidesGFF2968 and GFF2969 are separated by 11 nucleotidesGFF2969 and GFF2970 overlap by 4 nucleotides GFF2967 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 398,388 to 399,137 GFF2967 GFF2968 - MaoC-like dehydratase, at 399,174 to 400,043 GFF2968 GFF2969 - acyl-CoA synthetase (NDP forming type), at 400,055 to 402,211 GFF2969 GFF2970 - BUG/TctC family periplasmic protein, at 402,208 to 403,194 GFF2970 Position (kb) 400 401 402 403Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 399.344 kb on - strand, within GFF2968at 399.482 kb on - strand, within GFF2968at 399.901 kb on + strand, within GFF2968at 399.902 kb on - strand, within GFF2968at 399.907 kb on + strand, within GFF2968at 399.907 kb on + strand, within GFF2968at 399.907 kb on + strand, within GFF2968at 399.907 kb on + strand, within GFF2968at 399.908 kb on - strand, within GFF2968at 399.908 kb on - strand, within GFF2968at 399.908 kb on - strand, within GFF2968at 399.961 kb on + strandat 399.961 kb on + strandat 399.961 kb on + strandat 399.962 kb on - strandat 399.962 kb on - strandat 399.983 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 400.038 kb on - strandat 400.603 kb on + strand, within GFF2969at 400.607 kb on + strand, within GFF2969at 400.607 kb on + strand, within GFF2969at 400.607 kb on + strand, within GFF2969at 400.607 kb on + strand, within GFF2969at 400.608 kb on - strand, within GFF2969at 400.875 kb on + strand, within GFF2969at 400.998 kb on + strand, within GFF2969at 400.999 kb on - strand, within GFF2969at 400.999 kb on - strand, within GFF2969at 400.999 kb on - strand, within GFF2969at 400.999 kb on - strand, within GFF2969at 400.999 kb on - strand, within GFF2969at 401.266 kb on - strand, within GFF2969at 401.515 kb on - strand, within GFF2969at 401.515 kb on - strand, within GFF2969at 401.659 kb on - strand, within GFF2969at 401.736 kb on + strand, within GFF2969at 402.069 kb on + strandat 402.069 kb on + strandat 402.069 kb on + strandat 402.069 kb on + strandat 402.069 kb on + strandat 402.070 kb on - strandat 402.070 kb on - strandat 402.311 kb on + strand, within GFF2970at 402.375 kb on + strand, within GFF2970at 402.375 kb on + strand, within GFF2970at 402.375 kb on + strand, within GFF2970at 402.375 kb on + strand, within GFF2970at 402.376 kb on - strand, within GFF2970at 402.376 kb on - strand, within GFF2970at 402.376 kb on - strand, within GFF2970at 402.376 kb on - strand, within GFF2970at 402.471 kb on + strand, within GFF2970at 402.471 kb on + strand, within GFF2970at 402.471 kb on + strand, within GFF2970at 402.471 kb on + strand, within GFF2970at 402.472 kb on - strand, within GFF2970at 402.472 kb on - strand, within GFF2970at 402.472 kb on - strand, within GFF2970at 402.472 kb on - strand, within GFF2970at 402.560 kb on + strand, within GFF2970at 402.560 kb on + strand, within GFF2970at 402.560 kb on + strand, within GFF2970at 402.560 kb on + strand, within GFF2970at 402.560 kb on + strand, within GFF2970at 402.561 kb on - strand, within GFF2970at 402.561 kb on - strand, within GFF2970at 402.561 kb on - strand, within GFF2970at 402.561 kb on - strand, within GFF2970at 402.671 kb on + strand, within GFF2970at 402.671 kb on + strand, within GFF2970at 402.672 kb on - strand, within GFF2970at 402.672 kb on - strand, within GFF2970at 402.832 kb on + strand, within GFF2970at 402.833 kb on - strand, within GFF2970at 402.854 kb on + strand, within GFF2970at 402.854 kb on + strand, within GFF2970at 402.869 kb on + strand, within GFF2970at 402.869 kb on + strand, within GFF2970at 402.869 kb on + strand, within GFF2970at 402.870 kb on - strand, within GFF2970at 402.917 kb on + strand, within GFF2970at 403.101 kb on - strandat 403.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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399,344 - GFF2968 0.20 +0.0
399,482 - GFF2968 0.35 +0.1
399,901 + GFF2968 0.84 +0.5
399,902 - GFF2968 0.84 -1.7
399,907 + GFF2968 0.84 -0.5
399,907 + GFF2968 0.84 -1.1
399,907 + GFF2968 0.84 +0.0
399,907 + GFF2968 0.84 +0.6
399,908 - GFF2968 0.84 -0.8
399,908 - GFF2968 0.84 -0.2
399,908 - GFF2968 0.84 +0.5
399,961 + +0.3
399,961 + +0.2
399,961 + -0.5
399,962 - -0.7
399,962 - +0.5
399,983 + -0.1
399,985 + -1.6
399,985 + +0.4
399,985 + -0.4
399,985 + -0.7
399,985 + -0.7
399,985 + -0.2
399,985 + -0.5
399,985 + +0.3
399,986 - +0.1
399,986 - -0.2
399,986 - -1.3
399,986 - -2.0
399,986 - -0.8
399,986 - -0.2
399,986 - -2.2
400,038 - -1.3
400,603 + GFF2969 0.25 -0.3
400,607 + GFF2969 0.26 -0.6
400,607 + GFF2969 0.26 -0.6
400,607 + GFF2969 0.26 -0.6
400,607 + GFF2969 0.26 -0.2
400,608 - GFF2969 0.26 -0.7
400,875 + GFF2969 0.38 -0.4
400,998 + GFF2969 0.44 -0.3
400,999 - GFF2969 0.44 +0.7
400,999 - GFF2969 0.44 -0.1
400,999 - GFF2969 0.44 +0.1
400,999 - GFF2969 0.44 -2.5
400,999 - GFF2969 0.44 -2.3
401,266 - GFF2969 0.56 -0.7
401,515 - GFF2969 0.68 +0.7
401,515 - GFF2969 0.68 -0.9
401,659 - GFF2969 0.74 +0.7
401,736 + GFF2969 0.78 -0.0
402,069 + -1.1
402,069 + +0.1
402,069 + -0.9
402,069 + -0.3
402,069 + -0.6
402,070 - +0.2
402,070 - -0.6
402,311 + GFF2970 0.10 +0.7
402,375 + GFF2970 0.17 -0.7
402,375 + GFF2970 0.17 -0.3
402,375 + GFF2970 0.17 +0.1
402,375 + GFF2970 0.17 +1.5
402,376 - GFF2970 0.17 -0.3
402,376 - GFF2970 0.17 +0.0
402,376 - GFF2970 0.17 +4.0
402,376 - GFF2970 0.17 +0.4
402,471 + GFF2970 0.27 +0.5
402,471 + GFF2970 0.27 +0.0
402,471 + GFF2970 0.27 -0.3
402,471 + GFF2970 0.27 +1.0
402,472 - GFF2970 0.27 +1.1
402,472 - GFF2970 0.27 -0.2
402,472 - GFF2970 0.27 -1.1
402,472 - GFF2970 0.27 -0.2
402,560 + GFF2970 0.36 -1.3
402,560 + GFF2970 0.36 -0.3
402,560 + GFF2970 0.36 +0.3
402,560 + GFF2970 0.36 -0.8
402,560 + GFF2970 0.36 -0.1
402,561 - GFF2970 0.36 -0.1
402,561 - GFF2970 0.36 -1.2
402,561 - GFF2970 0.36 +1.1
402,561 - GFF2970 0.36 -0.5
402,671 + GFF2970 0.47 +0.8
402,671 + GFF2970 0.47 -0.0
402,672 - GFF2970 0.47 -0.3
402,672 - GFF2970 0.47 -0.7
402,832 + GFF2970 0.63 -0.1
402,833 - GFF2970 0.63 +1.2
402,854 + GFF2970 0.65 -0.3
402,854 + GFF2970 0.65 +0.4
402,869 + GFF2970 0.67 -0.3
402,869 + GFF2970 0.67 -0.5
402,869 + GFF2970 0.67 +0.1
402,870 - GFF2970 0.67 -0.9
402,917 + GFF2970 0.72 -0.1
403,101 - -1.5
403,101 - +0.1

Or see this region's nucleotide sequence