Strain Fitness in Variovorax sp. SCN45 around GFF2771

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2770 and GFF2771 are separated by 34 nucleotidesGFF2771 and GFF2772 are separated by 41 nucleotides GFF2770 - BUG/TctC family periplasmic protein, at 199,972 to 200,964 GFF2770 GFF2771 - BUG/TctC family periplasmic protein, at 200,999 to 201,970 GFF2771 GFF2772 - Site-specific tyrosine recombinase XerD, at 202,012 to 202,923 GFF2772 Position (kb) 200 201 202Strain fitness (log2 ratio) -2 -1 0 1 2at 200.036 kb on + strandat 200.141 kb on + strand, within GFF2770at 200.141 kb on + strand, within GFF2770at 200.141 kb on + strand, within GFF2770at 200.142 kb on - strand, within GFF2770at 200.142 kb on - strand, within GFF2770at 200.142 kb on - strand, within GFF2770at 200.142 kb on - strand, within GFF2770at 200.216 kb on + strand, within GFF2770at 200.216 kb on + strand, within GFF2770at 200.216 kb on + strand, within GFF2770at 200.217 kb on - strand, within GFF2770at 200.217 kb on - strand, within GFF2770at 200.217 kb on - strand, within GFF2770at 200.396 kb on + strand, within GFF2770at 200.396 kb on + strand, within GFF2770at 200.396 kb on + strand, within GFF2770at 200.396 kb on + strand, within GFF2770at 200.397 kb on - strand, within GFF2770at 200.397 kb on - strand, within GFF2770at 200.397 kb on - strand, within GFF2770at 200.579 kb on + strand, within GFF2770at 200.579 kb on + strand, within GFF2770at 200.579 kb on + strand, within GFF2770at 200.579 kb on + strand, within GFF2770at 200.579 kb on + strand, within GFF2770at 200.579 kb on + strand, within GFF2770at 200.580 kb on - strand, within GFF2770at 200.580 kb on - strand, within GFF2770at 200.580 kb on - strand, within GFF2770at 200.580 kb on - strand, within GFF2770at 200.580 kb on - strand, within GFF2770at 200.580 kb on - strand, within GFF2770at 200.580 kb on - strand, within GFF2770at 200.580 kb on - strand, within GFF2770at 201.420 kb on + strand, within GFF2771at 201.420 kb on + strand, within GFF2771at 201.421 kb on - strand, within GFF2771at 201.421 kb on - strand, within GFF2771at 201.592 kb on + strand, within GFF2771at 201.593 kb on - strand, within GFF2771at 201.593 kb on - strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.594 kb on + strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.595 kb on - strand, within GFF2771at 201.621 kb on + strand, within GFF2771at 201.621 kb on + strand, within GFF2771at 201.621 kb on + strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.622 kb on - strand, within GFF2771at 201.645 kb on + strand, within GFF2771at 201.645 kb on + strand, within GFF2771at 201.646 kb on - strand, within GFF2771at 201.646 kb on - strand, within GFF2771at 201.666 kb on + strand, within GFF2771at 201.666 kb on + strand, within GFF2771at 201.667 kb on - strand, within GFF2771at 201.711 kb on + strand, within GFF2771at 201.712 kb on - strand, within GFF2771at 201.774 kb on + strand, within GFF2771at 201.774 kb on + strand, within GFF2771at 201.774 kb on + strand, within GFF2771at 201.775 kb on - strand, within GFF2771at 202.073 kb on + strandat 202.073 kb on + strandat 202.073 kb on + strandat 202.073 kb on + strandat 202.073 kb on + strandat 202.073 kb on + strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.074 kb on - strandat 202.331 kb on + strand, within GFF2772at 202.478 kb on + strand, within GFF2772at 202.479 kb on - strand, within GFF2772at 202.479 kb on - strand, within GFF2772at 202.479 kb on - strand, within GFF2772at 202.661 kb on + strand, within GFF2772at 202.661 kb on + strand, within GFF2772at 202.661 kb on + strand, within GFF2772at 202.661 kb on + strand, within GFF2772at 202.662 kb on - strand, within GFF2772at 202.662 kb on - strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.733 kb on + strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.734 kb on - strand, within GFF2772at 202.935 kb on + strandat 202.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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200,036 + -1.1
200,141 + GFF2770 0.17 +0.9
200,141 + GFF2770 0.17 +0.3
200,141 + GFF2770 0.17 +1.0
200,142 - GFF2770 0.17 +1.3
200,142 - GFF2770 0.17 -1.2
200,142 - GFF2770 0.17 -0.9
200,142 - GFF2770 0.17 -1.9
200,216 + GFF2770 0.25 -0.4
200,216 + GFF2770 0.25 +0.4
200,216 + GFF2770 0.25 -1.3
200,217 - GFF2770 0.25 -1.0
200,217 - GFF2770 0.25 -0.0
200,217 - GFF2770 0.25 +0.4
200,396 + GFF2770 0.43 +0.9
200,396 + GFF2770 0.43 -0.1
200,396 + GFF2770 0.43 -0.2
200,396 + GFF2770 0.43 -0.7
200,397 - GFF2770 0.43 +0.3
200,397 - GFF2770 0.43 -0.9
200,397 - GFF2770 0.43 -0.7
200,579 + GFF2770 0.61 -0.2
200,579 + GFF2770 0.61 -1.0
200,579 + GFF2770 0.61 -0.0
200,579 + GFF2770 0.61 -1.1
200,579 + GFF2770 0.61 -1.5
200,579 + GFF2770 0.61 +0.9
200,580 - GFF2770 0.61 -0.9
200,580 - GFF2770 0.61 -1.5
200,580 - GFF2770 0.61 -1.7
200,580 - GFF2770 0.61 -1.8
200,580 - GFF2770 0.61 -0.9
200,580 - GFF2770 0.61 +0.4
200,580 - GFF2770 0.61 -0.8
200,580 - GFF2770 0.61 -0.4
201,420 + GFF2771 0.43 +0.0
201,420 + GFF2771 0.43 -0.4
201,421 - GFF2771 0.43 +0.8
201,421 - GFF2771 0.43 -0.3
201,592 + GFF2771 0.61 +0.2
201,593 - GFF2771 0.61 -0.4
201,593 - GFF2771 0.61 -1.2
201,594 + GFF2771 0.61 -0.5
201,594 + GFF2771 0.61 +0.3
201,594 + GFF2771 0.61 +0.1
201,594 + GFF2771 0.61 +0.2
201,594 + GFF2771 0.61 -0.1
201,594 + GFF2771 0.61 -0.0
201,594 + GFF2771 0.61 +0.4
201,594 + GFF2771 0.61 +1.1
201,594 + GFF2771 0.61 -1.9
201,595 - GFF2771 0.61 -1.1
201,595 - GFF2771 0.61 -0.8
201,595 - GFF2771 0.61 +0.0
201,595 - GFF2771 0.61 -0.4
201,595 - GFF2771 0.61 -0.8
201,595 - GFF2771 0.61 +0.2
201,595 - GFF2771 0.61 -2.1
201,595 - GFF2771 0.61 -0.6
201,595 - GFF2771 0.61 -0.5
201,595 - GFF2771 0.61 +1.7
201,621 + GFF2771 0.64 +0.8
201,621 + GFF2771 0.64 +0.0
201,621 + GFF2771 0.64 +0.7
201,622 - GFF2771 0.64 +0.2
201,622 - GFF2771 0.64 +1.0
201,622 - GFF2771 0.64 +1.1
201,622 - GFF2771 0.64 +0.4
201,622 - GFF2771 0.64 +0.3
201,622 - GFF2771 0.64 +0.6
201,645 + GFF2771 0.66 -2.0
201,645 + GFF2771 0.66 -0.1
201,646 - GFF2771 0.67 -1.5
201,646 - GFF2771 0.67 -0.5
201,666 + GFF2771 0.69 -0.5
201,666 + GFF2771 0.69 -0.6
201,667 - GFF2771 0.69 +0.2
201,711 + GFF2771 0.73 -0.1
201,712 - GFF2771 0.73 -0.1
201,774 + GFF2771 0.80 +0.3
201,774 + GFF2771 0.80 +0.3
201,774 + GFF2771 0.80 +1.9
201,775 - GFF2771 0.80 -0.0
202,073 + -0.3
202,073 + +0.1
202,073 + -0.1
202,073 + -0.3
202,073 + -0.6
202,073 + -0.9
202,074 - -0.7
202,074 - +0.1
202,074 - -1.3
202,074 - -0.9
202,074 - -0.5
202,074 - -0.4
202,074 - -1.0
202,331 + GFF2772 0.35 -0.7
202,478 + GFF2772 0.51 -1.3
202,479 - GFF2772 0.51 -0.4
202,479 - GFF2772 0.51 -0.8
202,479 - GFF2772 0.51 -1.9
202,661 + GFF2772 0.71 +0.4
202,661 + GFF2772 0.71 -0.6
202,661 + GFF2772 0.71 -0.5
202,661 + GFF2772 0.71 +0.9
202,662 - GFF2772 0.71 -1.6
202,662 - GFF2772 0.71 -1.1
202,733 + GFF2772 0.79 -1.8
202,733 + GFF2772 0.79 -0.2
202,733 + GFF2772 0.79 +0.1
202,733 + GFF2772 0.79 +0.1
202,733 + GFF2772 0.79 -1.3
202,733 + GFF2772 0.79 +1.7
202,733 + GFF2772 0.79 -0.6
202,733 + GFF2772 0.79 -1.9
202,733 + GFF2772 0.79 -0.8
202,734 - GFF2772 0.79 -0.1
202,734 - GFF2772 0.79 +0.4
202,734 - GFF2772 0.79 -0.6
202,734 - GFF2772 0.79 -0.5
202,734 - GFF2772 0.79 +0.5
202,734 - GFF2772 0.79 -0.6
202,734 - GFF2772 0.79 +0.7
202,734 - GFF2772 0.79 -0.4
202,935 + +0.1
202,936 - -0.6

Or see this region's nucleotide sequence