Strain Fitness in Variovorax sp. SCN45 around GFF2691

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
119,272	-		GFF2689	0.54	-0.2
119,371	+		GFF2689	0.64	-2.3
119,536	+		GFF2689	0.81	+0.3
119,537	-		GFF2689	0.81	-0.6
119,537	-		GFF2689	0.81	+0.4
119,537	-		GFF2689	0.81	-0.5
119,564	-		GFF2689	0.84	+0.3
119,591	+		GFF2689	0.87	+0.5
119,592	-		GFF2689	0.87	-0.8
119,782	-		GFF2690	0.15	+0.2
119,851	+		GFF2690	0.30	-0.8
120,217	+				-0.3
120,217	+				+0.1
120,218	-				-0.2
120,360	+		GFF2691	0.15	-0.8
120,361	-		GFF2691	0.15	+2.3
120,361	-		GFF2691	0.15	-0.5
120,749	+		GFF2691	0.72	-0.6
120,749	+		GFF2691	0.72	+1.7
120,750	-		GFF2691	0.73	-0.8
120,782	+		GFF2691	0.77	-1.9
120,867	-				-0.7
120,875	+				+0.1
120,875	+				+0.0
120,876	-				+0.1
121,115	-		GFF2692	0.32	-0.4
121,237	+		GFF2692	0.53	-0.2
121,301	-		GFF2692	0.64	-0.1
121,351	+		GFF2692	0.73	-1.2
121,636	-		GFF2693	0.16	+0.7
121,636	-		GFF2693	0.16	+1.1
121,665	+		GFF2693	0.19	-0.5
121,665	+		GFF2693	0.19	+0.3
121,734	+		GFF2693	0.25	-0.6
121,734	+		GFF2693	0.25	+0.7
121,734	+		GFF2693	0.25	-0.6
121,735	-		GFF2693	0.25	+0.1
121,735	-		GFF2693	0.25	-0.7
121,896	+		GFF2693	0.41	-0.2
121,897	-		GFF2693	0.42	-0.4