Strain Fitness in Variovorax sp. SCN45 around GFF2658

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
78,734	+		GFF2657	0.24	-0.4
78,735	-		GFF2657	0.24	-0.6
78,809	+		GFF2657	0.32	-0.1
78,809	+		GFF2657	0.32	-0.0
78,809	+		GFF2657	0.32	-0.5
78,809	+		GFF2657	0.32	-0.3
78,810	-		GFF2657	0.32	-0.3
79,101	-		GFF2657	0.62	+0.3
79,101	-		GFF2657	0.62	+0.4
79,101	-		GFF2657	0.62	+0.0
79,101	-		GFF2657	0.62	+0.4
79,166	+		GFF2657	0.69	-0.2
79,166	+		GFF2657	0.69	-0.3
79,166	+		GFF2657	0.69	+0.3
79,166	+		GFF2657	0.69	+0.4
79,167	-		GFF2657	0.69	-0.2
79,271	+		GFF2657	0.80	-0.5
79,271	+		GFF2657	0.80	+0.5
79,496	+				-0.4
79,496	+				-2.2
79,642	-				+2.5
79,642	-				-2.4
79,642	-				+0.0
79,770	+		GFF2658	0.12	-0.9
79,770	+		GFF2658	0.12	-0.1
80,025	+		GFF2658	0.27	-0.1
80,025	+		GFF2658	0.27	-0.5
80,025	+		GFF2658	0.27	+0.7
80,025	+		GFF2658	0.27	+0.1
80,026	-		GFF2658	0.27	-0.7
80,026	-		GFF2658	0.27	-1.4
80,026	-		GFF2658	0.27	+0.9
80,055	+		GFF2658	0.28	-1.1
80,055	+		GFF2658	0.28	-0.7
80,055	+		GFF2658	0.28	+0.6
80,056	-		GFF2658	0.28	+0.9
80,056	-		GFF2658	0.28	+0.0
80,146	-		GFF2658	0.33	+0.3
80,176	-		GFF2658	0.35	-0.1
80,176	-		GFF2658	0.35	-0.6
80,232	+		GFF2658	0.38	-0.5
80,403	+		GFF2658	0.48	+0.5
80,403	+		GFF2658	0.48	-0.1
80,404	-		GFF2658	0.48	+0.2
80,446	-		GFF2658	0.50	+0.1
80,475	+		GFF2658	0.52	-0.6
80,475	+		GFF2658	0.52	-1.6
80,475	+		GFF2658	0.52	-1.1
80,475	+		GFF2658	0.52	-0.4
80,476	-		GFF2658	0.52	+0.1
80,476	-		GFF2658	0.52	-0.7
80,476	-		GFF2658	0.52	-0.4
80,476	-		GFF2658	0.52	-0.4
80,509	-		GFF2658	0.54	-0.9
80,745	+		GFF2658	0.67	+0.3
80,745	+		GFF2658	0.67	+0.1
80,746	-		GFF2658	0.67	-2.3
80,746	-		GFF2658	0.67	-1.1
80,746	-		GFF2658	0.67	-0.9
80,778	+		GFF2658	0.69	-0.2
80,778	+		GFF2658	0.69	+1.7
80,778	+		GFF2658	0.69	-0.7
80,778	+		GFF2658	0.69	-0.9
80,778	+		GFF2658	0.69	-1.2
80,778	+		GFF2658	0.69	+2.7
80,778	+		GFF2658	0.69	-0.7
80,778	+		GFF2658	0.69	-0.1
80,778	+		GFF2658	0.69	-0.1
80,778	+		GFF2658	0.69	+0.0
80,778	+		GFF2658	0.69	-0.6
80,779	-		GFF2658	0.69	+0.0
80,779	-		GFF2658	0.69	-0.7
80,779	-		GFF2658	0.69	-0.5
80,779	-		GFF2658	0.69	-0.3
80,779	-		GFF2658	0.69	+0.4
81,087	+		GFF2658	0.86	-0.4
81,087	+		GFF2658	0.86	+0.3
81,088	-		GFF2658	0.86	+0.1
81,088	-		GFF2658	0.86	-1.4
81,088	-		GFF2658	0.86	-0.8
81,088	-		GFF2658	0.86	-1.1
81,330	+				-0.7
81,330	+				-1.5
81,331	-				+0.7
81,331	-				-0.3
81,352	+				+0.7
81,352	+				-1.7
81,352	+				-2.8
81,353	-				-0.9
81,638	+		GFF2659	0.24	-0.9
81,638	+		GFF2659	0.24	-3.4
82,094	+		GFF2659	0.73	-0.1
82,094	+		GFF2659	0.73	-0.7
82,094	+		GFF2659	0.73	-2.6