Strain Fitness in Variovorax sp. SCN45 around GFF2619

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
21,048	+		GFF2617	0.12	-0.7
21,048	+		GFF2617	0.12	-0.3
21,202	+				+0.7
21,202	+				-0.3
21,202	+				-0.5
21,202	+				-1.4
21,202	+				+0.6
21,202	+				-2.3
21,202	+				+0.3
21,202	+				+0.7
21,202	+				+0.6
21,203	-				-1.2
21,203	-				-0.7
21,204	+				+0.4
21,204	+				-1.0
21,204	+				+0.7
21,204	+				+1.1
21,205	-				-0.1
21,205	-				-0.6
21,205	-				-0.4
21,205	-				-0.7
21,205	-				-0.7
21,210	+				-0.3
21,210	+				+0.9
21,210	+				+0.7
21,210	+				-0.9
21,211	-				+0.5
21,211	-				+0.5
21,262	+				+0.4
21,262	+				-1.8
21,262	+				-1.1
21,262	+				-1.1
21,262	+				-1.0
21,262	+				-0.9
21,263	-				-0.1
21,263	-				+1.2
21,263	-				-0.1
21,275	+				+0.7
21,275	+				+0.1
21,275	+				+0.2
21,275	+				+0.7
21,275	+				+0.1
21,276	-				+1.4
21,276	-				-0.4
21,276	-				-1.0
21,276	-				+0.6
21,276	-				-0.3
21,276	-				-0.6
21,276	-				+0.7
21,276	-				+0.3
21,276	-				-0.8
21,276	-				-0.2
21,276	-				-0.2
21,277	+				+0.4
21,278	-				-0.2
21,340	+				+1.7
21,405	+				-0.0
21,405	+				-0.7
21,406	-				-0.7
21,406	-				-1.6
21,426	+				-0.2
21,426	+				-0.0
21,427	-				+0.9
21,461	-				+0.2
21,498	+				-2.0
21,498	+				-0.4
21,498	+				-0.3
21,499	-				+0.1
21,499	-				-0.4
21,499	-				-1.7
21,499	-				+1.3
21,499	-				-0.7
21,501	+				-0.2
21,502	-				-0.1
21,502	-				-0.1
21,502	-				-0.1
21,507	+				+0.5
21,516	+				-0.2
21,517	-				-0.6
21,517	-				+0.6
21,517	-				-0.7
21,517	-				-1.3
21,561	+				-1.9
21,561	+				-0.4
21,606	+				-0.0
21,606	+				+0.6
21,606	+				-0.7
21,606	+				+0.1
21,607	-				-0.9
21,607	-				-0.1
21,607	-				+1.4
21,607	-				+0.9
21,607	-				-0.2
21,607	-				-0.1
21,661	+				-0.1
21,662	-				+0.1
21,662	-				-1.1
21,671	-				+0.2
21,763	+		GFF2618	0.26	-1.3
21,786	+		GFF2618	0.32	-0.3
21,787	-		GFF2618	0.33	+0.8
21,787	-		GFF2618	0.33	-0.3
21,879	+		GFF2618	0.56	-1.1
21,917	+		GFF2618	0.66	-1.7
21,948	-		GFF2618	0.74	-0.0
22,066	+				-1.4
22,068	+				-0.5
22,069	-				-0.4
22,069	-				-0.9
22,070	+				-0.4
22,070	+				-0.1
22,070	+				+0.9
22,070	+				-0.8
22,070	+				+0.7
22,070	+				-0.8
22,070	+				+0.7
22,071	-				+0.2
22,071	-				-0.4
22,071	-				-0.9
22,071	-				-0.1
22,071	-				-0.4
22,111	+				-1.7
22,111	+				-0.7
22,111	+				+0.3
22,111	+				+0.2
22,111	+				+0.3
22,111	+				-0.4
22,111	+				-0.3
22,111	+				+0.5
22,112	-				-0.3
22,112	-				+0.0
22,112	-				+0.7
22,153	+				-1.1
22,153	+				-0.6
22,153	+				+2.1
22,153	+				+0.3
22,154	-				-0.1
22,154	-				-1.0
22,154	-				-0.0
22,154	-				+0.9
22,223	-				+0.5
22,250	-				+0.1
22,318	+				-0.6
22,318	+				-0.2
22,318	+				-0.2
22,318	+				-0.2
22,318	+				+0.9
22,318	+				+0.1
22,318	+				-0.9
22,318	+				-0.7
22,318	+				+0.5
22,318	+				-1.4
22,319	-				-0.1
22,319	-				-0.3
22,319	-				+0.2
22,319	-				-0.3
22,319	-				-0.2
22,368	+				-0.9
22,369	-				+0.4
22,369	-				-1.3
22,459	+				+0.7
22,482	+				-2.3
22,516	+				-0.4
22,516	+				-0.3
22,516	+				+0.1
22,516	+				+1.0
22,517	-				-3.0
22,517	-				-0.1
22,517	-				-0.0
22,517	-				+0.1
22,517	-				+0.2
22,529	+				-0.5
22,529	+				+0.4
22,529	+				-0.2
22,529	+				+0.6
22,530	-				-0.5
22,530	-				-0.0
22,530	-				-0.3
22,555	-		GFF2619	0.10	+0.1
22,555	-		GFF2619	0.10	-0.8
22,555	-		GFF2619	0.10	-0.3
22,555	-		GFF2619	0.10	-0.4
22,555	-		GFF2619	0.10	+0.4
22,555	-		GFF2619	0.10	+0.7
22,555	-		GFF2619	0.10	+0.2
22,555	-		GFF2619	0.10	-0.2
22,555	-		GFF2619	0.10	-0.3
22,555	-		GFF2619	0.10	+0.1
22,555	-		GFF2619	0.10	-1.4
22,555	-		GFF2619	0.10	-1.2
22,555	-		GFF2619	0.10	-1.0
22,555	-		GFF2619	0.10	-0.2
22,555	-		GFF2619	0.10	-0.5
22,558	-		GFF2619	0.11	-1.0
22,572	+		GFF2619	0.11	-0.7
22,572	+		GFF2619	0.11	-0.9
22,572	+		GFF2619	0.11	+0.9
22,572	+		GFF2619	0.11	-0.1
22,572	+		GFF2619	0.11	-0.0
22,572	+		GFF2619	0.11	+0.3
22,572	+		GFF2619	0.11	-0.7
22,572	+		GFF2619	0.11	-1.3
22,572	+		GFF2619	0.11	-0.6
22,572	+		GFF2619	0.11	-3.2
22,572	+		GFF2619	0.11	+0.1
22,572	+		GFF2619	0.11	+0.8
22,572	-		GFF2619	0.11	+0.0
22,573	-		GFF2619	0.11	-0.8
22,573	-		GFF2619	0.11	-0.9
22,573	-		GFF2619	0.11	+1.1
22,573	-		GFF2619	0.11	+0.4
22,573	-		GFF2619	0.11	-0.8
22,573	-		GFF2619	0.11	+0.2
22,573	-		GFF2619	0.11	-1.7
22,573	-		GFF2619	0.11	+0.1
22,573	-		GFF2619	0.11	-0.9
22,573	-		GFF2619	0.11	+0.1
22,573	-		GFF2619	0.11	-1.2
22,573	-		GFF2619	0.11	-0.7
22,619	-		GFF2619	0.12	-1.9
22,619	-		GFF2619	0.12	+0.5
22,686	+		GFF2619	0.13	+0.1
22,686	+		GFF2619	0.13	+0.4
22,686	+		GFF2619	0.13	-0.3
22,686	+		GFF2619	0.13	-0.7
22,686	+		GFF2619	0.13	+0.7
22,686	+		GFF2619	0.13	-0.3
22,686	+		GFF2619	0.13	-0.8
22,686	+		GFF2619	0.13	+0.1
22,686	+		GFF2619	0.13	+0.7
22,686	+		GFF2619	0.13	-0.4
22,686	+		GFF2619	0.13	-0.2
22,739	-		GFF2619	0.14	+1.2
22,758	+		GFF2619	0.15	+0.4
22,758	+		GFF2619	0.15	+0.8
22,758	+		GFF2619	0.15	+0.1
22,758	+		GFF2619	0.15	-0.7
22,758	+		GFF2619	0.15	-0.4
22,758	+		GFF2619	0.15	+0.0
22,758	+		GFF2619	0.15	-0.2
22,758	+		GFF2619	0.15	-0.2
22,758	+		GFF2619	0.15	-0.3
22,758	+		GFF2619	0.15	-1.0
22,758	+		GFF2619	0.15	-0.6
22,759	-		GFF2619	0.15	-0.6
22,817	+		GFF2619	0.16	-0.4
22,817	+		GFF2619	0.16	-0.7
22,817	+		GFF2619	0.16	+1.3
22,818	-		GFF2619	0.16	-1.1
22,818	-		GFF2619	0.16	-0.6
22,818	-		GFF2619	0.16	-1.1
22,839	+		GFF2619	0.16	-2.2
22,839	+		GFF2619	0.16	+0.3
22,839	+		GFF2619	0.16	-0.6
22,839	+		GFF2619	0.16	-2.5
22,839	+		GFF2619	0.16	-0.5
22,839	+		GFF2619	0.16	-0.4
22,839	+		GFF2619	0.16	-0.5
22,840	-		GFF2619	0.16	-0.3
22,840	-		GFF2619	0.16	+0.3
22,840	-		GFF2619	0.16	-0.3
22,953	+		GFF2619	0.19	-1.7
22,953	+		GFF2619	0.19	-0.2
22,953	+		GFF2619	0.19	-1.2
22,953	+		GFF2619	0.19	+0.8
22,953	+		GFF2619	0.19	+0.3
22,953	+		GFF2619	0.19	-0.9
22,953	+		GFF2619	0.19	-0.3
22,953	+		GFF2619	0.19	+0.2
22,953	+		GFF2619	0.19	-0.2
22,953	+		GFF2619	0.19	-0.7
22,953	+		GFF2619	0.19	+3.3
22,953	+		GFF2619	0.19	-1.0
22,954	-		GFF2619	0.19	-0.3
22,954	-		GFF2619	0.19	-1.7
22,954	-		GFF2619	0.19	-0.4
22,954	-		GFF2619	0.19	-0.5
22,954	-		GFF2619	0.19	-0.5
22,954	-		GFF2619	0.19	-1.1
22,954	-		GFF2619	0.19	-1.2
22,954	-		GFF2619	0.19	-0.1
22,954	-		GFF2619	0.19	+0.1
22,954	-		GFF2619	0.19	-0.5
22,954	-		GFF2619	0.19	-0.1
22,954	-		GFF2619	0.19	+1.3
22,954	-		GFF2619	0.19	-0.1
23,097	+		GFF2619	0.22	+0.7
23,097	+		GFF2619	0.22	-0.8
23,097	+		GFF2619	0.22	+0.2
23,097	+		GFF2619	0.22	+0.6
23,098	-		GFF2619	0.22	+0.3
23,098	-		GFF2619	0.22	+1.0
23,098	-		GFF2619	0.22	-1.3
23,148	+		GFF2619	0.23	-1.2
23,148	+		GFF2619	0.23	+0.3
23,148	+		GFF2619	0.23	-0.2
23,148	+		GFF2619	0.23	-0.9
23,148	+		GFF2619	0.23	-0.4
23,148	+		GFF2619	0.23	+0.3
23,149	-		GFF2619	0.23	-1.3
23,165	+		GFF2619	0.23	-0.7
23,165	+		GFF2619	0.23	-0.2
23,165	+		GFF2619	0.23	-1.8
23,166	-		GFF2619	0.23	+0.1
23,166	-		GFF2619	0.23	-0.2
23,166	-		GFF2619	0.23	+0.1
23,166	-		GFF2619	0.23	+0.1
23,166	-		GFF2619	0.23	+0.4
23,223	+		GFF2619	0.24	-0.7
23,223	+		GFF2619	0.24	+0.2
23,223	+		GFF2619	0.24	-1.3
23,223	+		GFF2619	0.24	-0.1
23,223	+		GFF2619	0.24	+0.7
23,223	+		GFF2619	0.24	+0.1
23,223	+		GFF2619	0.24	+0.1
23,223	+		GFF2619	0.24	-0.9
23,223	+		GFF2619	0.24	+0.3
23,223	+		GFF2619	0.24	-0.7
23,224	-		GFF2619	0.24	-0.5
23,224	-		GFF2619	0.24	-0.6
23,224	-		GFF2619	0.24	+0.1
23,224	-		GFF2619	0.24	-1.4
23,224	-		GFF2619	0.24	-0.1
23,224	-		GFF2619	0.24	+1.3
23,224	-		GFF2619	0.24	-0.1
23,238	+		GFF2619	0.25	-0.7
23,238	+		GFF2619	0.25	-0.6
23,238	+		GFF2619	0.25	+0.2
23,238	+		GFF2619	0.25	-0.4
23,238	+		GFF2619	0.25	+1.3
23,238	+		GFF2619	0.25	-1.6
23,238	+		GFF2619	0.25	-0.5
23,238	+		GFF2619	0.25	-0.7
23,239	-		GFF2619	0.25	-0.3
23,239	-		GFF2619	0.25	+1.1
23,239	-		GFF2619	0.25	-0.2
23,451	+		GFF2619	0.29	-0.3
23,451	+		GFF2619	0.29	-1.0
23,451	+		GFF2619	0.29	-0.8
23,452	-		GFF2619	0.29	-0.7
23,457	+		GFF2619	0.29	+0.3
23,458	-		GFF2619	0.29	+0.3
23,458	-		GFF2619	0.29	+0.5
23,458	-		GFF2619	0.29	-0.3
23,514	+		GFF2619	0.30	+0.2
23,514	+		GFF2619	0.30	+1.1
23,514	+		GFF2619	0.30	-1.1
23,515	-		GFF2619	0.30	-0.0
23,515	-		GFF2619	0.30	+0.3
23,515	-		GFF2619	0.30	-1.7
23,520	+		GFF2619	0.30	+0.6
23,520	+		GFF2619	0.30	+1.5
23,520	+		GFF2619	0.30	+0.1
23,520	+		GFF2619	0.30	+1.1
23,520	+		GFF2619	0.30	+1.7
23,520	+		GFF2619	0.30	+0.2
23,520	+		GFF2619	0.30	-0.7
23,521	-		GFF2619	0.30	-0.7
23,521	-		GFF2619	0.30	-2.2
23,521	-		GFF2619	0.30	+0.4
23,521	-		GFF2619	0.30	+0.0
23,521	-		GFF2619	0.30	-0.6
23,607	+		GFF2619	0.32	+0.3
23,607	+		GFF2619	0.32	-0.3
23,608	-		GFF2619	0.32	-1.9
23,608	-		GFF2619	0.32	-0.2
23,705	+		GFF2619	0.34	-0.5
23,705	+		GFF2619	0.34	-1.6
23,705	+		GFF2619	0.34	+0.1
23,705	+		GFF2619	0.34	-0.3
23,705	+		GFF2619	0.34	+2.1
23,706	-		GFF2619	0.34	-0.0
23,706	-		GFF2619	0.34	+0.1
23,706	-		GFF2619	0.34	+0.4
23,730	+		GFF2619	0.35	+0.3
23,730	+		GFF2619	0.35	-0.7
23,730	+		GFF2619	0.35	+0.6
23,730	+		GFF2619	0.35	-1.2
23,731	-		GFF2619	0.35	+3.0
23,731	-		GFF2619	0.35	+0.4
23,731	-		GFF2619	0.35	-0.4
23,731	-		GFF2619	0.35	-1.3
23,731	-		GFF2619	0.35	-0.3
23,796	+		GFF2619	0.36	-0.7
23,835	+		GFF2619	0.37	-2.7
23,835	+		GFF2619	0.37	-0.3
23,835	+		GFF2619	0.37	+0.3
23,836	-		GFF2619	0.37	-0.2
23,836	-		GFF2619	0.37	-1.3
23,836	-		GFF2619	0.37	-0.3
23,836	-		GFF2619	0.37	+0.6
23,875	-		GFF2619	0.38	-0.6
23,875	-		GFF2619	0.38	+0.4
23,934	+		GFF2619	0.39	-0.5
23,934	+		GFF2619	0.39	-0.6
23,935	-		GFF2619	0.39	+0.3
24,058	-		GFF2619	0.41	-0.5
24,120	+		GFF2619	0.43	-0.0
24,120	+		GFF2619	0.43	+0.4
24,120	+		GFF2619	0.43	+0.2
24,120	+		GFF2619	0.43	+0.1
24,121	-		GFF2619	0.43	-0.4
24,190	-		GFF2619	0.44	-0.1
24,190	-		GFF2619	0.44	-0.3
24,199	+		GFF2619	0.44	-0.8
24,199	+		GFF2619	0.44	-0.3
24,199	+		GFF2619	0.44	+0.0
24,200	-		GFF2619	0.44	+0.3
24,200	-		GFF2619	0.44	+0.3
24,200	-		GFF2619	0.44	-0.1
24,200	-		GFF2619	0.44	-0.9
24,246	+		GFF2619	0.45	-0.3
24,246	+		GFF2619	0.45	-0.3
24,246	+		GFF2619	0.45	+0.2
24,246	+		GFF2619	0.45	+0.1
24,246	+		GFF2619	0.45	+0.3
24,247	-		GFF2619	0.45	-0.1
24,247	-		GFF2619	0.45	-0.4
24,247	-		GFF2619	0.45	-0.5
24,247	-		GFF2619	0.45	+0.8
24,247	-		GFF2619	0.45	-0.7
24,247	-		GFF2619	0.45	-0.0
24,247	-		GFF2619	0.45	-0.4
24,247	-		GFF2619	0.45	-1.2
24,247	-		GFF2619	0.45	-0.3
24,247	-		GFF2619	0.45	-0.2
24,252	+		GFF2619	0.45	-0.1
24,253	-		GFF2619	0.45	-0.9
24,253	-		GFF2619	0.45	-0.3
24,409	-		GFF2619	0.49	+0.5
24,471	+		GFF2619	0.50	+0.4
24,471	+		GFF2619	0.50	-0.5
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