Strain Fitness in Variovorax sp. SCN45 around GFF246

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF245 and GFF246 are separated by 131 nucleotidesGFF246 and GFF247 are separated by 72 nucleotides GFF245 - Aspartate aminotransferase (EC 2.6.1.1), at 272,796 to 273,968 GFF245 GFF246 - Transmembrane protein Msl3831, at 274,100 to 274,258 GFF246 GFF247 - ATP-dependent helicase HrpA, at 274,331 to 278,116 GFF247 Position (kb) 274 275Strain fitness (log2 ratio) -2 -1 0 1 2 3at 273.180 kb on + strand, within GFF245at 273.181 kb on - strand, within GFF245at 273.181 kb on - strand, within GFF245at 273.181 kb on - strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.189 kb on + strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.190 kb on - strand, within GFF245at 273.420 kb on + strand, within GFF245at 273.420 kb on + strand, within GFF245at 273.421 kb on - strand, within GFF245at 273.421 kb on - strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.519 kb on + strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.520 kb on - strand, within GFF245at 273.645 kb on + strand, within GFF245at 273.645 kb on + strand, within GFF245at 273.645 kb on + strand, within GFF245at 273.646 kb on - strand, within GFF245at 273.646 kb on - strand, within GFF245at 273.646 kb on - strand, within GFF245at 273.646 kb on - strand, within GFF245at 273.666 kb on + strand, within GFF245at 273.687 kb on + strand, within GFF245at 273.688 kb on - strand, within GFF245at 273.765 kb on + strand, within GFF245at 273.765 kb on + strand, within GFF245at 273.765 kb on + strand, within GFF245at 273.765 kb on + strand, within GFF245at 273.766 kb on - strand, within GFF245at 273.766 kb on - strand, within GFF245at 273.766 kb on - strand, within GFF245at 273.766 kb on - strand, within GFF245at 273.766 kb on - strand, within GFF245at 273.873 kb on + strandat 273.873 kb on + strandat 273.873 kb on + strandat 273.874 kb on - strandat 273.874 kb on - strandat 273.874 kb on - strandat 273.874 kb on - strandat 274.000 kb on + strandat 274.140 kb on + strand, within GFF246at 274.140 kb on + strand, within GFF246at 274.141 kb on - strand, within GFF246at 274.141 kb on - strand, within GFF246at 274.147 kb on - strand, within GFF246at 274.169 kb on + strand, within GFF246at 274.169 kb on + strand, within GFF246at 274.170 kb on - strand, within GFF246at 274.170 kb on - strand, within GFF246at 274.170 kb on - strand, within GFF246at 274.171 kb on + strand, within GFF246at 274.172 kb on - strand, within GFF246at 274.187 kb on + strand, within GFF246at 274.187 kb on + strand, within GFF246at 274.187 kb on + strand, within GFF246at 274.188 kb on - strand, within GFF246at 274.188 kb on - strand, within GFF246at 274.188 kb on - strand, within GFF246at 274.188 kb on - strand, within GFF246at 274.188 kb on - strand, within GFF246at 274.254 kb on + strandat 274.254 kb on + strandat 274.254 kb on + strandat 274.254 kb on + strandat 274.254 kb on + strandat 274.254 kb on + strandat 274.254 kb on + strandat 274.254 kb on + strandat 274.254 kb on + strandat 274.254 kb on + strandat 274.254 kb on + strandat 274.255 kb on - strandat 274.255 kb on - strandat 274.255 kb on - strandat 274.255 kb on - strandat 274.255 kb on - strandat 274.255 kb on - strandat 274.255 kb on - strandat 274.255 kb on - strandat 274.255 kb on - strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.256 kb on + strandat 274.257 kb on - strandat 274.257 kb on - strandat 274.257 kb on - strandat 274.257 kb on - strandat 274.257 kb on - strandat 274.257 kb on - strandat 274.257 kb on - strandat 274.257 kb on - strandat 274.257 kb on - strandat 274.257 kb on - strandat 274.497 kb on + strandat 274.498 kb on - strandat 274.735 kb on - strand, within GFF247at 274.923 kb on + strand, within GFF247at 274.923 kb on + strand, within GFF247at 274.923 kb on + strand, within GFF247at 274.923 kb on + strand, within GFF247at 274.924 kb on - strand, within GFF247at 274.924 kb on - strand, within GFF247at 274.924 kb on - strand, within GFF247at 274.924 kb on - strand, within GFF247at 274.924 kb on - strand, within GFF247at 274.924 kb on - strand, within GFF247at 274.969 kb on - strand, within GFF247at 274.969 kb on - strand, within GFF247at 274.969 kb on - strand, within GFF247at 275.131 kb on - strand, within GFF247

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
273,180 + GFF245 0.33 -1.3
273,181 - GFF245 0.33 -0.1
273,181 - GFF245 0.33 -0.9
273,181 - GFF245 0.33 +0.8
273,189 + GFF245 0.34 -0.4
273,189 + GFF245 0.34 +0.1
273,189 + GFF245 0.34 -0.1
273,189 + GFF245 0.34 -1.4
273,189 + GFF245 0.34 +0.1
273,189 + GFF245 0.34 -0.3
273,189 + GFF245 0.34 -0.9
273,189 + GFF245 0.34 -0.6
273,189 + GFF245 0.34 -0.9
273,189 + GFF245 0.34 +0.1
273,189 + GFF245 0.34 -1.4
273,189 + GFF245 0.34 +0.5
273,190 - GFF245 0.34 -1.2
273,190 - GFF245 0.34 +1.4
273,190 - GFF245 0.34 -0.8
273,190 - GFF245 0.34 +0.1
273,190 - GFF245 0.34 -1.2
273,190 - GFF245 0.34 -0.2
273,190 - GFF245 0.34 -0.5
273,190 - GFF245 0.34 -0.7
273,420 + GFF245 0.53 -0.2
273,420 + GFF245 0.53 +1.4
273,421 - GFF245 0.53 -0.4
273,421 - GFF245 0.53 +0.3
273,519 + GFF245 0.62 +0.5
273,519 + GFF245 0.62 +1.4
273,519 + GFF245 0.62 -0.6
273,519 + GFF245 0.62 +1.4
273,519 + GFF245 0.62 +0.2
273,520 - GFF245 0.62 -0.9
273,520 - GFF245 0.62 -0.4
273,520 - GFF245 0.62 -0.3
273,520 - GFF245 0.62 -0.5
273,520 - GFF245 0.62 -1.9
273,645 + GFF245 0.72 +0.7
273,645 + GFF245 0.72 -0.1
273,645 + GFF245 0.72 +1.4
273,646 - GFF245 0.72 -0.7
273,646 - GFF245 0.72 -0.4
273,646 - GFF245 0.72 -1.1
273,646 - GFF245 0.72 +0.1
273,666 + GFF245 0.74 +0.2
273,687 + GFF245 0.76 +0.4
273,688 - GFF245 0.76 -0.2
273,765 + GFF245 0.83 -0.8
273,765 + GFF245 0.83 -0.3
273,765 + GFF245 0.83 -0.4
273,765 + GFF245 0.83 -0.1
273,766 - GFF245 0.83 +0.0
273,766 - GFF245 0.83 +3.0
273,766 - GFF245 0.83 +0.5
273,766 - GFF245 0.83 -0.0
273,766 - GFF245 0.83 +1.0
273,873 + -0.1
273,873 + -0.0
273,873 + +0.2
273,874 - -1.6
273,874 - -0.2
273,874 - -0.4
273,874 - -0.6
274,000 + -0.2
274,140 + GFF246 0.25 -0.5
274,140 + GFF246 0.25 +0.4
274,141 - GFF246 0.26 -0.9
274,141 - GFF246 0.26 -1.3
274,147 - GFF246 0.30 -0.1
274,169 + GFF246 0.43 +0.2
274,169 + GFF246 0.43 +1.4
274,170 - GFF246 0.44 +0.1
274,170 - GFF246 0.44 -0.6
274,170 - GFF246 0.44 -0.4
274,171 + GFF246 0.45 -0.4
274,172 - GFF246 0.45 -0.2
274,187 + GFF246 0.55 -0.8
274,187 + GFF246 0.55 -2.2
274,187 + GFF246 0.55 -0.9
274,188 - GFF246 0.55 -0.6
274,188 - GFF246 0.55 +0.3
274,188 - GFF246 0.55 -0.2
274,188 - GFF246 0.55 -0.6
274,188 - GFF246 0.55 -1.1
274,254 + -0.7
274,254 + +0.4
274,254 + -0.6
274,254 + -0.4
274,254 + -0.5
274,254 + -0.9
274,254 + +0.2
274,254 + -1.0
274,254 + +0.2
274,254 + +1.4
274,254 + +0.2
274,255 - -1.2
274,255 - +0.5
274,255 - +0.3
274,255 - +0.3
274,255 - -0.7
274,255 - -0.9
274,255 - -0.6
274,255 - -0.0
274,255 - +0.8
274,256 + +0.2
274,256 + -1.7
274,256 + +0.7
274,256 + -0.0
274,256 + -0.5
274,256 + +1.2
274,256 + +0.4
274,256 + -0.9
274,256 + -0.7
274,256 + -0.2
274,256 + -0.0
274,257 - -0.4
274,257 - +0.7
274,257 - -0.6
274,257 - +0.2
274,257 - -1.0
274,257 - -1.1
274,257 - -0.5
274,257 - +0.3
274,257 - -0.4
274,257 - -0.1
274,497 + -0.1
274,498 - -0.9
274,735 - GFF247 0.11 +1.6
274,923 + GFF247 0.16 +1.6
274,923 + GFF247 0.16 -0.8
274,923 + GFF247 0.16 -0.2
274,923 + GFF247 0.16 +0.3
274,924 - GFF247 0.16 -0.0
274,924 - GFF247 0.16 +0.4
274,924 - GFF247 0.16 -0.0
274,924 - GFF247 0.16 -0.2
274,924 - GFF247 0.16 -0.5
274,924 - GFF247 0.16 -0.5
274,969 - GFF247 0.17 +0.9
274,969 - GFF247 0.17 -0.4
274,969 - GFF247 0.17 +0.0
275,131 - GFF247 0.21 -0.6

Or see this region's nucleotide sequence